Wall clock time and date at job start Mon Mar 30 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36931 * 120.00288 * 2 1 4 4 H 1.08000 * 120.00371 * 202.34780 * 3 2 1 5 5 C 1.38817 * 120.00045 * 22.33706 * 3 2 1 6 6 N 1.31620 * 119.99796 * 11.35208 * 5 3 2 7 7 Si 1.86794 * 120.00141 * 191.34807 * 5 3 2 8 8 H 1.48503 * 109.47127 * 60.00097 * 7 5 3 9 9 H 1.48498 * 109.47271 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47361 * 300.00682 * 7 5 3 11 11 C 1.46505 * 119.99833 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46945 * 270.00131 * 11 2 1 13 13 C 1.52995 * 109.47160 * 180.02562 * 12 11 2 14 14 H 1.09000 * 115.56429 * 29.29502 * 13 12 11 15 15 C 1.52999 * 117.49844 * 243.61000 * 13 12 11 16 16 C 1.53002 * 60.00199 * 252.51009 * 15 13 12 17 17 H 1.09004 * 117.49597 * 252.51674 * 16 15 13 18 18 C 1.52996 * 117.50046 * 107.50907 * 16 15 13 19 19 C 1.52993 * 117.50059 * 180.02562 * 18 16 15 20 20 C 1.52992 * 60.00398 * 252.51408 * 19 18 16 21 21 H 1.08998 * 109.47298 * 274.21395 * 1 2 3 22 22 H 1.09003 * 109.46768 * 34.21722 * 1 2 3 23 23 H 1.09004 * 109.47323 * 154.21090 * 1 2 3 24 24 H 0.96999 * 119.99697 * 179.97438 * 6 5 3 25 25 H 1.08993 * 109.46942 * 150.00453 * 11 2 1 26 26 H 1.08995 * 109.47327 * 29.99966 * 11 2 1 27 27 H 1.09000 * 109.47007 * 59.99961 * 12 11 2 28 28 H 1.08999 * 109.46997 * 300.00569 * 12 11 2 29 29 H 1.09001 * 117.50254 * 145.01837 * 15 13 12 30 30 H 1.09000 * 117.50051 * 359.97438 * 15 13 12 31 31 H 1.08997 * 115.54891 * 325.72781 * 18 16 15 32 32 H 1.09001 * 117.49753 * 0.02562 * 19 18 16 33 33 H 1.09002 * 117.49763 * 145.02240 * 19 18 16 34 34 H 1.08995 * 117.50122 * 252.51094 * 20 19 18 35 35 H 1.09003 * 117.49662 * 107.48520 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4569 6 7 0.3841 2.2691 1.0934 7 14 2.3367 4.0047 0.1685 8 1 2.4917 4.2330 -1.2907 9 1 1.4851 5.0735 0.7495 10 1 3.6721 4.0286 0.8177 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 6 3.2180 -3.0345 1.4440 14 1 3.8700 -3.2014 0.5866 15 6 2.5187 -4.2542 2.0476 16 6 3.6739 -3.5863 2.7963 17 1 4.6259 -4.1162 2.8284 18 6 3.3294 -2.7716 4.0446 19 6 4.4845 -2.1033 4.7929 20 6 3.7862 -3.3234 5.3966 21 1 -0.3634 0.0755 1.0249 22 1 -0.3633 0.8498 -0.5779 23 1 -0.3634 -0.9253 -0.4471 24 1 -0.0460 3.0777 1.4130 25 1 3.1499 -1.1387 -0.5132 26 1 1.6085 -2.0286 -0.5129 27 1 1.5000 -1.8399 1.9572 28 1 3.0414 -0.9499 1.9568 29 1 2.7107 -5.2234 1.5873 30 1 1.5135 -4.1128 2.4446 31 1 2.3770 -2.2425 4.0127 32 1 5.4897 -2.2437 4.3957 33 1 4.2920 -1.1342 5.2535 34 1 3.1344 -3.1572 6.2542 35 1 4.3321 -4.2669 5.3965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714825709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:31 Heat of formation + Delta-G solvation = 59.679157 kcal Electronic energy + Delta-G solvation = -13771.733342 eV Core-core repulsion = 11578.745689 eV Total energy + Delta-G solvation = -2192.987654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.57230 -35.91254 -34.88903 -31.52568 -28.89364 -25.77488 -23.78933 -23.54831 -22.19087 -20.93932 -20.36186 -18.72093 -16.62990 -15.65573 -15.12700 -14.66485 -13.92128 -13.52441 -13.38349 -12.80405 -12.40868 -12.15972 -11.56126 -11.38856 -11.12956 -10.97651 -10.86974 -10.67351 -10.57207 -10.43089 -10.30311 -10.04213 -9.88953 -9.75750 -9.27636 -9.02637 -8.46327 -6.65490 -5.64144 -3.08828 3.43324 3.48138 3.49406 3.72940 4.40538 4.56915 4.69586 5.00810 5.11288 5.22548 5.46475 5.51505 5.53787 5.57793 5.72075 5.73844 5.91017 6.00531 6.09657 6.23285 6.23918 6.34305 6.41944 6.52806 6.64686 6.70905 6.86067 7.04275 7.23928 7.47220 7.81279 7.88336 8.49470 9.33347 9.97506 10.46855 11.41296 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.007731 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.627658 B = 3621.004264 C = 4072.992364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.605 5.605 3 C -0.250 4.250 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.155 3.845 12 C -0.104 4.104 13 C -0.132 4.132 14 H 0.099 0.901 15 C -0.177 4.177 16 C -0.128 4.128 17 H 0.095 0.905 18 C -0.114 4.114 19 C -0.176 4.176 20 C -0.184 4.184 21 H 0.026 0.974 22 H 0.043 0.957 23 H -0.005 1.005 24 H 0.251 0.749 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -10.918 4.112 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.328 5.328 3 C -0.379 4.379 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.144 4.144 13 C -0.151 4.151 14 H 0.117 0.883 15 C -0.214 4.214 16 C -0.146 4.146 17 H 0.113 0.887 18 C -0.132 4.132 19 C -0.213 4.213 20 C -0.221 4.221 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.013 0.987 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.944 -10.761 4.158 12.551 hybrid contribution 0.403 0.932 0.072 1.018 sum 5.347 -9.829 4.230 11.962 Atomic orbital electron populations 1.20771 0.82707 0.95386 0.99106 1.43982 1.01883 1.00829 1.86094 1.19187 0.97835 0.85545 1.35374 0.91524 1.25014 0.97776 0.98422 0.98683 1.70060 1.17938 1.26967 1.40725 0.86347 0.78490 0.83944 0.77837 1.21154 1.21691 1.21024 1.20811 0.95429 0.87785 0.93201 1.21841 0.98391 0.92877 1.01323 1.22546 1.01982 0.95456 0.95120 0.88316 1.23060 0.97142 0.96877 1.04351 1.21759 0.98023 1.02669 0.92132 0.88662 1.21696 0.99182 1.01683 0.90626 1.22888 0.97389 0.96865 1.04206 1.22917 1.04416 0.97938 0.96873 0.95569 0.93842 0.98653 0.93853 0.94131 0.94700 0.92860 0.91503 0.89496 0.88988 0.87435 0.89036 0.88823 0.89151 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.24 9.01 59.85 0.54 4.78 16 2 N -0.61 -15.83 2.93 -181.11 -0.53 -16.36 16 3 C -0.25 -7.07 9.67 -15.06 -0.15 -7.22 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.00 -0.04 5.13 -17.43 -0.09 -0.13 16 6 N -0.91 -27.20 10.59 55.49 0.59 -26.62 16 7 Si 0.90 22.35 29.57 -169.99 -5.03 17.33 16 8 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.15 3.31 5.67 -4.04 -0.02 3.29 16 12 C -0.10 -2.02 4.62 -26.73 -0.12 -2.14 16 13 C -0.13 -2.04 5.74 -90.62 -0.52 -2.56 16 14 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 15 C -0.18 -2.41 9.90 -26.73 -0.26 -2.67 16 16 C -0.13 -1.77 5.85 -90.62 -0.53 -2.30 16 17 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.11 -1.63 5.10 -90.62 -0.46 -2.09 16 19 C -0.18 -2.33 10.25 -26.74 -0.27 -2.61 16 20 C -0.18 -2.21 10.25 -26.73 -0.27 -2.49 16 21 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 22 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 23 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 24 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 26 H 0.03 0.69 7.86 -51.93 -0.41 0.28 16 27 H 0.05 1.09 7.62 -51.93 -0.40 0.69 16 28 H 0.07 1.46 8.02 -51.93 -0.42 1.04 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.29 8.03 -51.93 -0.42 0.87 16 31 H 0.11 1.73 7.35 -51.93 -0.38 1.35 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -29.70 288.04 -8.90 -38.60 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.11 Total: -1.16 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.17 Total: -16.14 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.06 Total: -42.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.70 -8.90 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714825709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.283 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds