Wall clock time and date at job start Mon Mar 30 2020 02:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99886 * 2 1 4 4 H 1.08004 * 119.99843 * 159.41198 * 3 2 1 5 5 C 1.38810 * 120.00279 * 339.41564 * 3 2 1 6 6 N 1.31621 * 119.99800 * 347.71732 * 5 3 2 7 7 Si 1.86804 * 119.99990 * 167.98947 * 5 3 2 8 8 H 1.48498 * 109.46928 * 60.00084 * 7 5 3 9 9 H 1.48498 * 109.47098 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47135 * 300.00363 * 7 5 3 11 11 C 1.46503 * 119.99790 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.46883 * 269.99749 * 11 2 1 13 13 C 1.52998 * 109.46935 * 180.02562 * 12 11 2 14 14 H 1.09004 * 115.55464 * 29.27919 * 13 12 11 15 15 C 1.53002 * 117.50115 * 243.61015 * 13 12 11 16 16 C 1.53001 * 60.00274 * 252.51014 * 15 13 12 17 17 H 1.09000 * 117.50002 * 107.48650 * 16 15 13 18 18 C 1.52998 * 117.49749 * 252.51161 * 16 15 13 19 19 C 1.52998 * 117.49963 * 197.24350 * 18 16 15 20 20 C 1.53002 * 117.50072 * 128.61841 * 18 16 15 21 21 H 1.09005 * 109.47066 * 84.89552 * 1 2 3 22 22 H 1.08997 * 109.47051 * 204.89194 * 1 2 3 23 23 H 1.08997 * 109.46785 * 324.89456 * 1 2 3 24 24 H 0.96998 * 119.99594 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46999 * 29.99842 * 11 2 1 26 26 H 1.09003 * 109.46477 * 150.00024 * 11 2 1 27 27 H 1.08998 * 109.47379 * 299.99860 * 12 11 2 28 28 H 1.08995 * 109.47548 * 60.00502 * 12 11 2 29 29 H 1.09008 * 117.49651 * 359.97438 * 15 13 12 30 30 H 1.08997 * 117.50116 * 145.01978 * 15 13 12 31 31 H 1.09001 * 115.55347 * 342.94866 * 18 16 15 32 32 H 1.08998 * 117.49680 * 359.97438 * 19 18 16 33 33 H 1.09002 * 117.50455 * 145.01922 * 19 18 16 34 34 H 1.08999 * 117.49564 * 214.97596 * 20 18 16 35 35 H 1.08998 * 117.49913 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1780 1.2158 0.3289 5 6 1.5221 2.3497 -0.4226 6 7 0.3647 2.2841 -1.0458 7 14 2.3240 4.0084 -0.1137 8 1 3.6480 4.0507 -0.7848 9 1 1.4589 5.0855 -0.6583 10 1 2.5029 4.2073 1.3470 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2180 -3.0357 1.4411 14 1 3.8698 -3.2018 0.5833 15 6 2.5188 -4.2560 2.0437 16 6 3.6740 -3.5888 2.7929 17 1 3.4286 -3.0088 3.6826 18 6 5.0103 -4.3325 2.8374 19 6 6.0276 -3.8948 3.8930 20 6 6.2630 -3.5602 2.4187 21 1 -0.3633 0.0914 -1.0236 22 1 -0.3633 -0.9322 0.4325 23 1 -0.3633 0.8407 0.5910 24 1 -0.0740 3.0974 -1.3408 25 1 1.6084 -2.0282 -0.5147 26 1 3.1499 -1.1381 -0.5144 27 1 3.0416 -0.9516 1.9558 28 1 1.5002 -1.8416 1.9555 29 1 1.5136 -4.1149 2.4409 30 1 2.7109 -5.2248 1.5825 31 1 4.9667 -5.3930 2.5894 32 1 5.7450 -3.0767 4.5555 33 1 6.6534 -4.6674 4.3399 34 1 7.0435 -4.1127 1.8957 35 1 6.1350 -2.5223 2.1111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714825714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:33 Heat of formation + Delta-G solvation = 44.704148 kcal Electronic energy + Delta-G solvation = -13555.925409 eV Core-core repulsion = 11362.288390 eV Total energy + Delta-G solvation = -2193.637019 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68981 -37.70001 -36.23815 -33.55464 -30.70606 -27.93107 -25.78031 -24.38441 -23.25381 -22.56334 -21.30944 -20.61830 -18.71053 -16.94342 -16.59118 -16.09783 -15.66549 -15.38757 -14.75924 -14.53907 -14.20551 -13.72013 -12.98496 -12.80654 -12.77518 -12.49820 -12.44647 -12.27000 -12.17888 -12.05344 -11.80820 -11.77714 -11.62263 -11.32376 -10.71736 -10.57507 -10.23670 -8.78026 -7.81758 -5.29210 1.45311 1.48064 1.54896 2.51021 2.71230 3.12782 3.30642 3.58336 3.82688 3.97358 4.00844 4.21104 4.24111 4.43770 4.44596 4.58254 4.65654 4.79179 4.82495 4.86611 4.94995 5.01917 5.06534 5.21531 5.29740 5.30284 5.33287 5.35733 5.44678 5.57992 5.61867 5.70689 6.32919 7.15985 7.89244 8.32346 9.21613 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.006517 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.853933 B = 4295.315599 C = 4837.800414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.626 5.626 3 C -0.262 4.262 4 H 0.069 0.931 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.970 3.030 8 H -0.275 1.275 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.154 3.846 12 C -0.090 4.090 13 C -0.145 4.145 14 H 0.103 0.897 15 C -0.161 4.161 16 C -0.124 4.124 17 H 0.094 0.906 18 C -0.126 4.126 19 C -0.173 4.173 20 C -0.184 4.184 21 H 0.002 0.998 22 H 0.028 0.972 23 H 0.016 0.984 24 H 0.248 0.752 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.142 -13.434 7.735 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.349 5.349 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.200 1.200 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.028 3.972 12 C -0.130 4.130 13 C -0.163 4.163 14 H 0.121 0.879 15 C -0.198 4.198 16 C -0.142 4.142 17 H 0.112 0.888 18 C -0.144 4.144 19 C -0.210 4.210 20 C -0.221 4.221 21 H 0.021 0.979 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.036 -13.308 7.655 17.329 hybrid contribution 0.020 1.260 -0.057 1.262 sum 8.056 -12.048 7.599 16.364 Atomic orbital electron populations 1.20514 0.82856 0.95710 0.97479 1.44226 1.02211 1.01936 1.86553 1.19513 0.97054 0.86547 1.36096 0.91296 1.25783 0.98440 1.01822 0.99166 1.70252 1.18769 1.27209 1.42788 0.85294 0.77671 0.79350 0.77870 1.20048 1.21835 1.20541 1.20865 0.95193 0.86384 0.94758 1.21550 0.98262 0.94539 0.98670 1.22299 1.02849 0.94088 0.97096 0.87872 1.23189 0.96573 0.96947 1.03105 1.21865 0.94301 1.02693 0.95317 0.88763 1.21774 0.88467 0.98947 1.05203 1.23043 1.02453 1.03658 0.91834 1.22993 0.99718 1.01061 0.98298 0.97932 0.95401 0.96488 0.94305 0.93524 0.94189 0.94052 0.93314 0.88983 0.87420 0.86633 0.89324 0.87225 0.87674 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 8.96 127.77 1.15 10.50 16 2 N -0.63 -33.04 2.93 -726.93 -2.13 -35.17 16 3 C -0.26 -14.99 9.69 84.03 0.81 -14.18 16 4 H 0.07 3.83 7.86 -2.91 -0.02 3.80 16 5 C -0.06 -3.35 5.12 84.86 0.43 -2.92 16 6 N -0.94 -57.64 10.53 21.65 0.23 -57.41 16 7 Si 0.97 46.31 29.57 68.60 2.03 48.34 16 8 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 C 0.15 6.51 5.60 86.38 0.48 6.99 16 12 C -0.09 -3.25 5.82 30.59 0.18 -3.07 16 13 C -0.14 -4.05 5.38 -10.79 -0.06 -4.11 16 14 H 0.10 2.87 8.07 -2.38 -0.02 2.85 16 15 C -0.16 -3.74 9.90 30.60 0.30 -3.44 16 16 C -0.12 -2.98 5.59 -10.79 -0.06 -3.04 16 17 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 18 C -0.13 -2.55 5.87 -10.79 -0.06 -2.61 16 19 C -0.17 -3.17 10.25 30.59 0.31 -2.86 16 20 C -0.18 -3.73 10.18 30.60 0.31 -3.42 16 21 H 0.00 0.14 7.41 -2.38 -0.02 0.12 16 22 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 23 H 0.02 0.93 7.15 -2.39 -0.02 0.92 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 26 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.78 7.88 -2.39 -0.02 1.76 16 29 H 0.09 2.15 8.03 -2.38 -0.02 2.13 16 30 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -63.46 290.69 4.95 -58.51 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.02 Total: 7.88 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 3.80 Total: -22.15 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -1.90 Total: -92.58 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -63.46 4.95 -58.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714825714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.211 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds