Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50692 * 120.00686 * 2 1 4 4 C 1.53003 * 109.47606 * 125.19034 * 3 2 1 5 5 H 1.09005 * 109.46737 * 303.21926 * 4 3 2 6 6 C 1.52995 * 109.47514 * 183.22298 * 4 3 2 7 7 N 1.46897 * 109.47160 * 63.21409 * 4 3 2 8 8 C 1.47903 * 110.99872 * 57.15242 * 7 4 3 9 9 C 1.53990 * 107.05742 * 145.84122 * 8 7 4 10 10 C 1.54599 * 105.14335 * 358.77766 * 9 8 7 11 11 H 1.08993 * 110.72274 * 96.57328 * 10 9 8 12 12 C 1.50697 * 110.72520 * 219.68737 * 10 9 8 13 13 H 1.07995 * 120.00030 * 118.54650 * 12 10 9 14 14 C 1.37879 * 119.99648 * 298.53778 * 12 10 9 15 15 N 1.31512 * 120.00123 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99812 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46927 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47184 * 300.00500 * 16 14 12 19 19 H 1.48497 * 109.46874 * 60.00821 * 16 14 12 20 20 C 1.48537 * 111.00120 * 174.54817 * 7 4 3 21 21 H 1.08003 * 120.00864 * 180.02562 * 1 2 3 22 22 H 1.08010 * 119.99324 * 359.97438 * 1 2 3 23 23 H 1.08010 * 119.99324 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47101 * 5.18943 * 3 2 1 25 25 H 1.09001 * 109.47377 * 245.19016 * 3 2 1 26 26 H 1.08995 * 109.47437 * 52.90048 * 6 4 3 27 27 H 1.08996 * 109.47183 * 172.90870 * 6 4 3 28 28 H 1.09006 * 109.46421 * 292.90574 * 6 4 3 29 29 H 1.09006 * 109.91843 * 26.49179 * 8 7 4 30 30 H 1.09000 * 109.92231 * 265.19648 * 8 7 4 31 31 H 1.09008 * 110.31265 * 239.86177 * 9 8 7 32 32 H 1.09005 * 110.39467 * 117.73880 * 9 8 7 33 33 H 0.96998 * 120.00058 * 180.02562 * 15 14 12 34 34 H 1.09000 * 110.66392 * 81.84827 * 20 7 4 35 35 H 1.08996 * 110.66423 * 318.72151 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3049 0.0000 4 6 3.0386 1.3310 1.1789 5 1 2.4898 1.1748 2.1077 6 6 3.7456 2.6869 1.2262 7 7 4.0351 0.2645 1.0137 8 6 4.7541 0.4052 -0.2712 9 6 6.1995 -0.0702 -0.0344 10 6 6.2581 -0.4551 1.4617 11 1 6.1117 -1.5275 1.5901 12 6 7.5648 -0.0201 2.0735 13 1 7.5704 0.6916 2.8857 14 6 8.7533 -0.5310 1.5962 15 7 8.7465 -1.3974 0.6069 16 14 10.3731 0.0077 2.3550 17 1 11.4949 -0.6812 1.6677 18 1 10.5269 1.4768 2.2023 19 1 10.3851 -0.3441 3.7976 20 6 5.0761 0.3403 2.0706 21 1 -0.5402 -0.9352 0.0004 22 1 -0.5399 0.9355 0.0004 23 1 1.8499 -0.9355 -0.0004 24 1 1.3590 2.1314 0.0929 25 1 2.6187 1.4040 -0.9328 26 1 3.0027 3.4844 1.2218 27 1 4.3443 2.7530 2.1346 28 1 4.3936 2.7892 0.3557 29 1 4.7532 1.4492 -0.5848 30 1 4.2793 -0.2142 -1.0322 31 1 6.9023 0.7358 -0.2455 32 1 6.4210 -0.9371 -0.6571 33 1 9.5825 -1.7570 0.2714 34 1 4.7270 -0.1320 2.9888 35 1 5.3630 1.3756 2.2543 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715785686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = 14.891585 kcal Electronic energy + Delta-G solvation = -14183.432133 eV Core-core repulsion = 11988.502344 eV Total energy + Delta-G solvation = -2194.929789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85629 -35.20091 -33.05646 -31.48409 -28.34856 -28.05754 -26.42920 -24.19861 -21.87103 -19.71912 -19.43752 -18.64401 -16.41511 -15.49339 -14.90164 -14.72502 -14.37406 -13.57272 -13.30848 -12.96359 -12.70931 -12.18803 -11.91650 -11.32138 -11.14928 -11.08830 -11.01216 -10.71102 -10.57978 -10.52759 -10.36261 -10.17854 -9.54505 -9.17618 -9.04226 -8.72176 -8.36405 -7.59705 -5.99582 -4.02927 2.51684 3.32397 3.37298 3.39552 4.43302 4.70571 5.09633 5.25784 5.31877 5.35616 5.57789 5.68720 5.76699 5.85964 5.95119 6.00679 6.06925 6.17624 6.28747 6.36101 6.49120 6.57416 6.71480 6.88224 6.93150 7.00557 7.20781 7.23502 7.65832 7.71641 7.81988 7.93276 8.07696 8.48125 8.99536 9.61074 11.10129 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.060685 B = 0.007283 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.290389 B = 3843.545125 C = 4032.057634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.120 4.120 3 C -0.089 4.089 4 C 0.075 3.925 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.512 5.512 8 C 0.029 3.971 9 C -0.101 4.101 10 C 0.053 3.947 11 H 0.034 0.966 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.034 3.966 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.117 0.883 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 5.095 -1.349 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.138 4.138 3 C -0.126 4.126 4 C -0.034 4.034 5 H 0.094 0.906 6 C -0.247 4.247 7 N -0.236 5.236 8 C -0.099 4.099 9 C -0.140 4.140 10 C 0.034 3.966 11 H 0.052 0.948 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.213 1.213 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.092 4.092 21 H 0.110 0.890 22 H 0.107 0.893 23 H 0.135 0.865 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.081 4.489 -1.446 12.043 hybrid contribution 1.359 1.073 0.302 1.758 sum -9.722 5.562 -1.144 11.259 Atomic orbital electron populations 1.23719 0.96007 1.01077 1.05089 1.23001 0.95348 0.99293 0.96156 1.20890 0.97579 0.95212 0.98967 1.21732 0.93801 0.89885 0.97999 0.90612 1.22505 1.01198 0.98108 1.02929 1.64983 1.13444 1.41678 1.03508 1.23022 0.96494 0.98392 0.91989 1.22296 0.91117 1.00173 1.00398 1.19510 0.91038 0.95386 0.90656 0.94778 1.21068 0.90712 1.25740 1.17955 0.92776 1.24960 0.98945 0.94923 0.94989 1.69968 1.26786 1.29883 1.25972 0.86706 0.83377 0.78717 0.79459 1.21327 1.20382 1.20268 1.23462 0.92237 0.99609 0.93933 0.88995 0.89338 0.86516 0.91902 0.90872 0.92967 0.91805 0.91956 0.94780 0.92335 0.92965 0.92294 0.93020 0.92215 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.64 14.32 29.02 0.42 -2.22 16 2 C -0.12 -1.64 9.22 -36.03 -0.33 -1.97 16 3 C -0.09 -1.21 4.93 -27.89 -0.14 -1.34 16 4 C 0.08 1.17 2.52 -67.72 -0.17 1.00 16 5 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 6 C -0.19 -2.79 8.37 37.15 0.31 -2.48 16 7 N -0.51 -9.62 4.96 -222.50 -1.10 -10.72 16 8 C 0.03 0.55 5.07 -2.76 -0.01 0.54 16 9 C -0.10 -2.39 5.51 -25.37 -0.14 -2.52 16 10 C 0.05 1.34 2.99 -89.91 -0.27 1.07 16 11 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 12 C -0.52 -14.18 8.42 -34.44 -0.29 -14.47 16 13 H 0.05 1.46 7.78 -52.49 -0.41 1.05 16 14 C 0.06 1.77 5.33 -17.82 -0.10 1.68 16 15 N -0.89 -25.62 12.44 55.43 0.69 -24.93 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.03 0.73 5.76 -1.90 -0.01 0.72 16 21 H 0.09 1.00 8.06 -52.48 -0.42 0.58 16 22 H 0.09 0.95 7.84 -52.48 -0.41 0.54 16 23 H 0.12 1.76 7.99 -52.48 -0.42 1.34 16 24 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 25 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.00 6.37 -51.93 -0.33 0.67 16 28 H 0.06 0.98 5.94 -51.93 -0.31 0.67 16 29 H 0.03 0.62 5.28 -51.93 -0.27 0.34 16 30 H 0.06 1.08 8.13 -51.93 -0.42 0.65 16 31 H 0.05 1.31 7.84 -51.92 -0.41 0.90 16 32 H 0.06 1.48 8.05 -51.93 -0.42 1.06 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.90 5.51 -51.93 -0.29 0.62 16 LS Contribution 274.93 15.07 4.14 4.14 Total: -1.00 -27.73 274.93 -7.72 -35.44 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.69 Total: -0.20 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.73 Total: -20.00 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.42 Total: -35.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.73 -7.72 -35.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715785686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.335 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds