Wall clock time and date at job start Mon Mar 30 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 115.54858 * 2 1 4 4 C 1.53002 * 117.52019 * 214.29224 * 2 1 3 5 5 C 1.53002 * 60.00188 * 252.52301 * 4 2 1 6 6 H 1.09000 * 117.51707 * 252.52228 * 5 4 2 7 7 C 1.52994 * 117.49723 * 107.48956 * 5 4 2 8 8 H 1.08996 * 115.55291 * 331.05203 * 7 5 4 9 9 C 1.52999 * 117.49900 * 116.72322 * 7 5 4 10 10 C 1.53002 * 60.00178 * 107.48972 * 9 7 5 11 11 H 1.08995 * 117.50096 * 107.49089 * 10 9 7 12 12 N 1.46895 * 117.49706 * 252.51314 * 10 9 7 13 13 C 1.46901 * 111.00239 * 227.64294 * 12 10 9 14 14 C 1.52998 * 109.47622 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99616 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00144 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00302 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47420 * 59.99463 * 19 17 15 21 21 H 1.48501 * 109.47500 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47291 * 299.99925 * 19 17 15 23 23 H 1.08990 * 109.47289 * 269.52975 * 1 2 3 24 24 H 1.09002 * 109.46741 * 29.53191 * 1 2 3 25 25 H 1.09003 * 109.46720 * 149.52700 * 1 2 3 26 26 H 1.08995 * 117.49530 * 0.02562 * 4 2 1 27 27 H 1.09001 * 117.49765 * 145.03281 * 4 2 1 28 28 H 1.09001 * 117.50145 * 214.97497 * 9 7 5 29 29 H 1.09006 * 117.49963 * 359.97438 * 9 7 5 30 30 H 1.00903 * 111.00160 * 103.69550 * 12 10 9 31 31 H 1.09003 * 109.47184 * 300.00796 * 13 12 10 32 32 H 1.09005 * 109.46874 * 59.99997 * 13 12 10 33 33 H 1.09005 * 109.46686 * 300.00326 * 14 13 12 34 34 H 1.08993 * 109.47027 * 60.00464 * 14 13 12 35 35 H 0.97000 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2370 -1.1210 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 3.1711 -0.8745 1.2694 7 6 1.3588 -2.1559 1.4718 8 1 0.4694 -2.4696 0.9253 9 6 2.0603 -3.2025 2.3398 10 6 1.2600 -2.0760 2.9966 11 1 0.3054 -2.3369 3.4534 12 7 2.0151 -1.0112 3.6702 13 6 1.4634 -0.7374 5.0039 14 6 2.2737 0.3749 5.6726 15 6 1.7080 0.6553 7.0410 16 1 0.8556 0.0964 7.3977 17 6 2.2781 1.6261 7.8369 18 7 3.3159 2.3071 7.4021 19 14 1.5766 1.9742 9.5327 20 1 1.6488 0.7435 10.3606 21 1 2.3631 3.0537 10.1818 22 1 0.1603 2.4018 9.4043 23 1 -0.3633 -0.0084 1.0275 24 1 -0.3633 0.8942 -0.5066 25 1 -0.3633 -0.8858 -0.5212 26 1 1.6120 -1.8586 -1.2680 27 1 3.1722 -0.8751 -1.2675 28 1 1.6321 -4.2046 2.3646 29 1 3.1471 -3.1539 2.4073 30 1 2.0372 -0.1729 3.1090 31 1 0.4240 -0.4228 4.9095 32 1 1.5158 -1.6410 5.6113 33 1 3.3132 0.0607 5.7668 34 1 2.2208 1.2783 5.0651 35 1 3.7168 2.9903 7.9619 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716545147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:40 Heat of formation + Delta-G solvation = 12.864152 kcal Electronic energy + Delta-G solvation = -13435.513302 eV Core-core repulsion = 11240.495597 eV Total energy + Delta-G solvation = -2195.017705 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00337 -37.49162 -35.77482 -34.08067 -30.44162 -29.32567 -26.10373 -24.67031 -22.49978 -22.24909 -21.97351 -19.82252 -18.46327 -17.15874 -16.65950 -16.46172 -15.92233 -15.17973 -14.69310 -14.34167 -14.08466 -13.90098 -13.39267 -13.16859 -13.05150 -12.81176 -12.50450 -12.33463 -12.15472 -12.09054 -11.71335 -11.62730 -11.36258 -11.27572 -10.74337 -10.56124 -10.16692 -9.12650 -8.20959 -6.33043 1.40130 1.43781 1.51769 2.40277 2.58207 3.12343 3.19419 3.33498 3.63835 3.87705 4.09818 4.22383 4.37283 4.38482 4.42858 4.49494 4.57657 4.64247 4.83485 4.93266 4.97324 4.98240 5.03756 5.06105 5.22927 5.31234 5.43833 5.44351 5.46246 5.65229 5.78273 6.14644 6.31366 6.51791 6.83743 7.36390 8.91234 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046022 B = 0.005636 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.253324 B = 4966.556962 C = 5180.930497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.159 4.159 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.134 4.134 6 H 0.090 0.910 7 C -0.110 4.110 8 H 0.119 0.881 9 C -0.160 4.160 10 C 0.002 3.998 11 H 0.095 0.905 12 N -0.665 5.665 13 C 0.087 3.913 14 C 0.032 3.968 15 C -0.547 4.547 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.338 0.662 31 H 0.019 0.981 32 H 0.057 0.943 33 H -0.007 1.007 34 H -0.010 1.010 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -7.790 -14.663 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.177 4.177 3 H 0.116 0.884 4 C -0.193 4.193 5 C -0.152 4.152 6 H 0.108 0.892 7 C -0.129 4.129 8 H 0.136 0.864 9 C -0.199 4.199 10 C -0.108 4.108 11 H 0.113 0.887 12 N -0.296 5.296 13 C -0.042 4.042 14 C -0.005 4.005 15 C -0.585 4.585 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.158 0.842 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.011 0.989 34 H 0.008 0.992 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.973 -8.072 -14.373 17.218 hybrid contribution -0.637 0.964 0.819 1.416 sum -5.610 -7.108 -13.554 16.300 Atomic orbital electron populations 1.21309 0.92281 1.02472 1.01362 1.22434 0.96025 0.94372 1.04895 0.88351 1.23146 1.02696 1.00816 0.92601 1.21689 1.00011 0.99293 0.94218 0.89200 1.22007 1.00619 0.99274 0.90979 0.86360 1.23226 0.99518 0.94499 1.02612 1.22527 0.97203 0.97491 0.93619 0.88702 1.60227 1.54144 1.11600 1.03627 1.21799 0.95309 0.98197 0.88856 1.18911 0.94763 0.92549 0.94290 1.21577 1.15228 1.19903 1.01787 0.92084 1.25995 0.95178 0.95602 1.02931 1.70109 1.23666 1.24335 1.39140 0.85447 0.78569 0.78058 0.78638 1.19128 1.20715 1.19051 0.93474 0.91651 0.91504 0.87591 0.88241 0.87064 0.89602 0.84235 0.96235 0.92445 0.98896 0.99152 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.07 71.98 0.65 -1.63 16 2 C -0.16 -3.43 6.41 -10.79 -0.07 -3.50 16 3 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 4 C -0.16 -2.93 9.90 30.60 0.30 -2.62 16 5 C -0.13 -3.21 4.69 -10.79 -0.05 -3.26 16 6 H 0.09 2.55 7.89 -2.39 -0.02 2.53 16 7 C -0.11 -2.59 5.00 -10.79 -0.05 -2.65 16 8 H 0.12 2.35 7.55 -2.39 -0.02 2.34 16 9 C -0.16 -4.04 10.18 30.59 0.31 -3.72 16 10 C 0.00 0.06 6.21 44.92 0.28 0.34 16 11 H 0.10 2.75 7.92 -2.39 -0.02 2.73 16 12 N -0.67 -25.03 6.43 -491.57 -3.16 -28.19 16 13 C 0.09 3.85 5.49 86.30 0.47 4.32 16 14 C 0.03 1.79 5.23 29.85 0.16 1.94 16 15 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 0.05 5.46 84.65 0.46 0.52 16 18 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 19 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H 0.05 1.05 8.03 -2.39 -0.02 1.03 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 26 H 0.11 1.69 8.03 -2.39 -0.02 1.68 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.34 12.70 7.59 -89.69 -0.68 12.02 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 33 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -64.06 291.33 2.21 -61.85 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.36 Total: 19.15 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.70 Total: -41.97 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.88 Total: -85.84 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.06 2.21 -61.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716545147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.716 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds