Wall clock time and date at job start Mon Mar 30 2020 02:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 115.56055 * 2 1 4 4 C 1.53000 * 117.49997 * 214.31487 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.49592 * 4 2 1 6 6 H 1.08999 * 117.49664 * 252.51862 * 5 4 2 7 7 C 1.52999 * 117.49968 * 107.50530 * 5 4 2 8 8 H 1.08998 * 115.54544 * 325.71609 * 7 5 4 9 9 C 1.53001 * 117.49951 * 180.02562 * 7 5 4 10 10 C 1.52999 * 117.50311 * 111.38710 * 7 5 4 11 11 H 1.08992 * 117.50015 * 215.00241 * 10 7 5 12 12 N 1.46897 * 117.49705 * 0.02562 * 10 7 5 13 13 C 1.46898 * 110.99719 * 204.99982 * 12 10 7 14 14 C 1.53008 * 109.47122 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47136 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99960 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00153 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99948 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46874 * 90.00512 * 19 17 15 21 21 H 1.48501 * 109.47298 * 209.99902 * 19 17 15 22 22 H 1.48497 * 109.47329 * 330.00521 * 19 17 15 23 23 H 1.08999 * 109.46945 * 154.30127 * 1 2 3 24 24 H 1.09006 * 109.47222 * 274.29451 * 1 2 3 25 25 H 1.09002 * 109.47499 * 34.29383 * 1 2 3 26 26 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 27 27 H 1.09002 * 117.49953 * 144.99738 * 4 2 1 28 28 H 1.09002 * 117.49764 * 359.97438 * 9 7 5 29 29 H 1.08998 * 117.49873 * 145.01835 * 9 7 5 30 30 H 1.00901 * 111.00755 * 81.04146 * 12 10 7 31 31 H 1.08999 * 109.47415 * 299.99517 * 13 12 10 32 32 H 1.08997 * 109.47252 * 59.99983 * 13 12 10 33 33 H 1.09008 * 109.46866 * 299.99867 * 14 13 12 34 34 H 1.08997 * 109.47007 * 59.99911 * 14 13 12 35 35 H 0.96998 * 119.99747 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2371 -1.1215 0.7650 6 1 3.1724 -0.8756 1.2679 7 6 1.3603 -2.1573 1.4714 8 1 0.4253 -2.4035 0.9680 9 6 1.3605 -2.1575 3.0014 10 6 2.0674 -3.2782 2.2359 11 1 1.5978 -4.2618 2.2354 12 7 3.5364 -3.2772 2.2359 13 6 4.0637 -4.6303 2.4571 14 6 5.5932 -4.5892 2.4499 15 6 6.1341 -5.9772 2.6775 16 1 5.4550 -6.8059 2.8132 17 6 7.4960 -6.1894 2.7114 18 7 7.9681 -7.4006 2.9105 19 14 8.6707 -4.7564 2.4744 20 1 8.9831 -4.1492 3.7932 21 1 9.9242 -5.2428 1.8441 22 1 8.0386 -3.7379 1.5979 23 1 -0.3633 -0.9260 -0.4456 24 1 -0.3634 0.0770 1.0248 25 1 -0.3634 0.8490 -0.5790 26 1 1.6112 -1.8586 -1.2681 27 1 3.1713 -0.8750 -1.2687 28 1 1.9857 -1.4200 3.5047 29 1 0.4256 -2.4039 3.5048 30 1 3.8977 -2.6317 2.9221 31 1 3.7145 -5.0035 3.4199 32 1 3.7146 -5.2906 1.6632 33 1 5.9421 -4.2162 1.4869 34 1 5.9426 -3.9288 3.2435 35 1 8.9263 -7.5499 2.9339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716545148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:43 Heat of formation + Delta-G solvation = 33.923733 kcal Electronic energy + Delta-G solvation = -13376.278474 eV Core-core repulsion = 11182.173981 eV Total energy + Delta-G solvation = -2194.104493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.91736 -36.45655 -34.05925 -32.20076 -29.04630 -28.51293 -24.06808 -23.46400 -21.75771 -20.84274 -20.30919 -18.72470 -16.76295 -16.05843 -15.28404 -14.87882 -14.19461 -13.77096 -13.25451 -13.13117 -12.95506 -12.47956 -12.43863 -12.10731 -11.63754 -11.43634 -11.20604 -10.97787 -10.88535 -10.63173 -10.05935 -9.91349 -9.82102 -9.65780 -9.21847 -9.16628 -8.52756 -7.72838 -6.03588 -4.01934 3.32707 3.40272 3.46376 3.62242 4.23167 4.47182 4.48743 4.66121 4.83499 4.94463 5.23021 5.30860 5.33826 5.37641 5.46856 5.48723 5.76294 5.78531 5.82146 5.91235 5.96324 6.00077 6.19969 6.25203 6.29171 6.30994 6.48403 6.77569 7.16258 7.38568 7.63696 7.75541 7.90724 8.54004 9.00498 9.58848 11.09800 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047176 B = 0.005838 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.376815 B = 4794.956794 C = 5127.253971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.166 4.166 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.094 4.094 6 H 0.106 0.894 7 C -0.116 4.116 8 H 0.099 0.901 9 C -0.204 4.204 10 C 0.038 3.962 11 H 0.106 0.894 12 N -0.658 5.658 13 C 0.075 3.925 14 C -0.010 4.010 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.263 1.263 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.336 0.664 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.008 0.992 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 13.881 -3.454 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.184 4.184 3 H 0.116 0.884 4 C -0.206 4.206 5 C -0.112 4.112 6 H 0.124 0.876 7 C -0.136 4.136 8 H 0.117 0.883 9 C -0.243 4.243 10 C -0.073 4.073 11 H 0.124 0.876 12 N -0.287 5.287 13 C -0.053 4.053 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.188 1.188 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.155 0.845 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.027 0.973 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.382 13.711 -4.124 19.598 hybrid contribution 0.568 0.506 0.848 1.139 sum -12.814 14.216 -3.276 19.418 Atomic orbital electron populations 1.21297 0.93294 1.01337 1.01512 1.22403 0.95157 0.94426 1.06434 0.88420 1.22998 1.02116 1.00701 0.94742 1.21568 0.99447 0.96915 0.93290 0.87586 1.21948 0.99534 0.99501 0.92599 0.88283 1.23482 1.03139 1.03360 0.94336 1.22507 0.89008 0.93546 1.02284 0.87640 1.60314 1.03327 1.10697 1.54384 1.22008 0.97542 0.87065 0.98696 1.19552 0.90739 0.97603 0.96899 1.21067 0.92472 0.93017 1.49398 0.91105 1.25002 0.98314 0.95588 0.94489 1.69916 1.13396 1.20676 1.50329 0.86751 0.80386 0.83232 0.78789 1.20401 1.21415 1.18776 0.92736 0.92348 0.92826 0.89134 0.89083 0.88874 0.89169 0.84543 0.95827 0.91601 0.95639 0.97340 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.05 37.16 0.34 -0.75 16 2 C -0.17 -1.78 6.41 -90.59 -0.58 -2.36 16 3 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 4 C -0.17 -2.02 9.89 -26.73 -0.26 -2.28 16 5 C -0.09 -1.18 5.41 -90.58 -0.49 -1.67 16 6 H 0.11 1.46 7.87 -51.93 -0.41 1.05 16 7 C -0.12 -1.44 5.18 -90.62 -0.47 -1.91 16 8 H 0.10 1.14 7.20 -51.93 -0.37 0.77 16 9 C -0.20 -2.42 9.95 -26.72 -0.27 -2.69 16 10 C 0.04 0.54 6.29 -67.70 -0.43 0.12 16 11 H 0.11 1.50 7.90 -51.93 -0.41 1.09 16 12 N -0.66 -11.19 5.96 -106.71 -0.64 -11.82 16 13 C 0.07 1.52 5.48 -3.82 -0.02 1.50 16 14 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 15 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 19 Si 0.88 22.05 27.47 -169.99 -4.67 17.39 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 H 0.05 0.50 7.40 -51.93 -0.38 0.11 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.34 5.42 8.52 -39.29 -0.33 5.09 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.64 7.20 -51.92 -0.37 0.26 16 34 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 288.32 15.07 4.34 4.34 Total: -1.00 -30.16 288.32 -8.98 -39.14 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.06 Total: 2.28 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.73 Total: -23.92 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.14 Total: -39.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.16 -8.98 -39.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716545148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.062 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds