Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 115.55255 * 2 1 4 4 C 1.53005 * 117.51780 * 214.29894 * 2 1 3 5 5 C 1.53009 * 117.50070 * 145.66782 * 2 1 3 6 6 H 1.08994 * 117.49752 * 215.02335 * 5 2 1 7 7 C 1.52997 * 117.49434 * 0.02562 * 5 2 1 8 8 H 1.09011 * 115.55949 * 85.68910 * 7 5 2 9 9 C 1.52996 * 117.49848 * 231.37468 * 7 5 2 10 10 C 1.52991 * 60.00051 * 107.49498 * 9 7 5 11 11 H 1.09004 * 117.49717 * 252.48834 * 10 9 7 12 12 N 1.46898 * 117.50208 * 107.49291 * 10 9 7 13 13 C 1.46904 * 111.00074 * 136.39051 * 12 10 9 14 14 C 1.52998 * 109.46861 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46700 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 H 1.09007 * 109.46935 * 274.32814 * 1 2 3 24 24 H 1.08997 * 109.47283 * 34.32534 * 1 2 3 25 25 H 1.08993 * 109.47224 * 154.33583 * 1 2 3 26 26 H 1.08994 * 117.49763 * 145.03284 * 4 2 1 27 27 H 1.08992 * 117.49793 * 0.02562 * 4 2 1 28 28 H 1.09007 * 117.50022 * 359.97438 * 9 7 5 29 29 H 1.09003 * 117.52214 * 214.97756 * 9 7 5 30 30 H 1.00900 * 110.99642 * 12.44076 * 12 10 9 31 31 H 1.09004 * 109.47048 * 60.00131 * 13 12 10 32 32 H 1.08997 * 109.46845 * 300.00295 * 13 12 10 33 33 H 1.09004 * 109.47139 * 60.00240 * 14 13 12 34 34 H 1.08997 * 109.47675 * 299.99840 * 14 13 12 35 35 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2365 -1.1207 0.7654 6 1 3.1711 -0.8745 1.2692 7 6 1.3588 -2.1560 1.4717 8 1 1.0288 -2.9921 0.8550 9 6 1.6470 -2.4374 2.9477 10 6 0.3973 -1.6501 2.5489 11 1 0.3898 -0.5797 2.7548 12 7 -0.8999 -2.3282 2.6730 13 6 -1.9047 -1.4374 3.2688 14 6 -3.2393 -2.1770 3.3809 15 6 -4.2699 -1.2634 3.9926 16 1 -4.0002 -0.2559 4.2730 17 6 -5.5574 -1.7138 4.1944 18 7 -6.4570 -0.9163 4.7278 19 14 -6.0240 -3.4565 3.7103 20 1 -5.7899 -4.3688 4.8585 21 1 -5.1939 -3.8890 2.5573 22 1 -7.4589 -3.4974 3.3301 23 1 -0.3633 0.0776 1.0248 24 1 -0.3634 0.8487 -0.5795 25 1 -0.3633 -0.9262 -0.4450 26 1 3.1720 -0.8751 -1.2676 27 1 1.6120 -1.8585 -1.2682 28 1 2.4623 -1.8853 3.4155 29 1 1.5068 -3.4584 3.3026 30 1 -0.8125 -3.1813 3.2045 31 1 -2.0294 -0.5571 2.6381 32 1 -1.5748 -1.1297 4.2610 33 1 -3.1150 -3.0575 4.0113 34 1 -3.5690 -2.4843 2.3885 35 1 -7.3627 -1.2333 4.8701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716545150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = 34.334965 kcal Electronic energy + Delta-G solvation = -13523.077183 eV Core-core repulsion = 11328.990522 eV Total energy + Delta-G solvation = -2194.086660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05335 -36.37790 -34.04286 -32.22272 -29.19785 -28.28771 -24.19860 -23.32302 -21.39168 -21.11415 -20.41620 -18.98007 -16.79457 -15.79350 -15.38719 -14.96447 -14.24323 -13.86388 -13.26860 -13.15441 -12.66070 -12.42545 -12.32697 -11.98265 -11.57329 -11.45576 -11.23073 -11.01131 -10.70519 -10.65987 -10.14399 -9.93579 -9.78775 -9.70961 -9.29901 -9.22236 -8.53111 -7.75260 -6.03978 -4.02392 3.32467 3.40075 3.46022 3.62048 4.04333 4.37495 4.46805 4.78086 4.82483 4.93643 5.19571 5.24656 5.30638 5.40168 5.45273 5.55627 5.76397 5.81097 5.91897 5.97366 6.05891 6.15787 6.17092 6.24116 6.28943 6.36633 6.53292 6.77125 7.15696 7.37582 7.62275 7.74402 7.89614 8.53399 9.00081 9.58402 11.09370 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006025 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.905332 B = 4646.317320 C = 4819.483783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.147 4.147 3 H 0.098 0.902 4 C -0.176 4.176 5 C -0.121 4.121 6 H 0.100 0.900 7 C -0.115 4.115 8 H 0.105 0.895 9 C -0.206 4.206 10 C 0.043 3.957 11 H 0.107 0.893 12 N -0.663 5.663 13 C 0.075 3.925 14 C -0.010 4.010 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.263 1.263 22 H -0.288 1.288 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.337 0.663 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.009 0.991 34 H 0.025 0.975 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.762 -1.695 -7.561 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 H 0.116 0.884 4 C -0.213 4.213 5 C -0.139 4.139 6 H 0.118 0.882 7 C -0.134 4.134 8 H 0.123 0.877 9 C -0.245 4.245 10 C -0.069 4.069 11 H 0.124 0.876 12 N -0.292 5.292 13 C -0.053 4.053 14 C -0.048 4.048 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.188 1.188 22 H -0.214 1.214 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.156 0.844 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.044 0.956 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.337 -1.542 -8.144 18.320 hybrid contribution 0.019 -0.878 0.746 1.153 sum 16.356 -2.420 -7.398 18.114 Atomic orbital electron populations 1.21377 0.91954 1.01714 1.02795 1.22380 0.96121 0.93742 1.04272 0.88416 1.23104 1.02236 1.02110 0.93809 1.21804 0.99626 0.99247 0.93234 0.88191 1.21914 1.00950 0.99984 0.90598 0.87684 1.23552 1.01354 1.01612 0.97973 1.22525 0.85690 0.97082 1.01557 0.87561 1.60328 1.04878 1.07817 1.56210 1.22006 0.91753 0.95585 0.95913 1.19555 0.92196 0.95954 0.97124 1.21061 0.93873 1.00367 1.40648 0.91090 1.25003 0.96362 0.97481 0.94532 1.69916 1.03733 1.36151 1.44496 0.86755 0.77586 0.85238 0.79594 1.20396 1.18781 1.21417 0.91307 0.92914 0.92175 0.89300 0.88762 0.89174 0.88918 0.84421 0.91580 0.95799 0.97314 0.95646 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.97 37.15 0.33 -1.23 16 2 C -0.15 -1.65 6.39 -90.62 -0.58 -2.23 16 3 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.18 -1.81 9.90 -26.72 -0.26 -2.08 16 5 C -0.12 -1.34 5.87 -90.61 -0.53 -1.87 16 6 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.11 -1.44 5.18 -90.63 -0.47 -1.91 16 8 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 9 C -0.21 -2.47 9.95 -26.74 -0.27 -2.74 16 10 C 0.04 0.61 4.33 -67.72 -0.29 0.31 16 11 H 0.11 1.56 7.05 -51.93 -0.37 1.19 16 12 N -0.66 -11.19 6.78 -106.73 -0.72 -11.91 16 13 C 0.08 1.52 5.48 -3.82 -0.02 1.50 16 14 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 15 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 19 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H 0.07 0.98 5.95 -51.92 -0.31 0.68 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 28 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 30 H 0.34 5.40 8.52 -39.29 -0.33 5.07 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 34 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 286.22 15.07 4.31 4.31 Total: -1.00 -29.85 286.22 -8.94 -38.79 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.99 Total: 2.85 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.64 Total: -24.04 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.05 Total: -39.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.85 -8.94 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716545150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.124 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds