Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 115.55255 * 2 1 4 4 C 1.53005 * 117.51780 * 214.29894 * 2 1 3 5 5 C 1.53009 * 117.50070 * 145.66782 * 2 1 3 6 6 H 1.08994 * 117.49752 * 215.02335 * 5 2 1 7 7 C 1.52997 * 117.49434 * 0.02562 * 5 2 1 8 8 H 1.09011 * 115.55949 * 85.68910 * 7 5 2 9 9 C 1.52996 * 117.49848 * 231.37468 * 7 5 2 10 10 C 1.52991 * 60.00051 * 107.49498 * 9 7 5 11 11 H 1.09004 * 117.49717 * 252.48834 * 10 9 7 12 12 N 1.46898 * 117.50208 * 107.49291 * 10 9 7 13 13 C 1.46904 * 111.00074 * 136.39051 * 12 10 9 14 14 C 1.52998 * 109.46861 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46700 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 H 1.09007 * 109.46935 * 274.32814 * 1 2 3 24 24 H 1.08997 * 109.47283 * 34.32534 * 1 2 3 25 25 H 1.08993 * 109.47224 * 154.33583 * 1 2 3 26 26 H 1.08994 * 117.49763 * 145.03284 * 4 2 1 27 27 H 1.08992 * 117.49793 * 0.02562 * 4 2 1 28 28 H 1.09007 * 117.50022 * 359.97438 * 9 7 5 29 29 H 1.09003 * 117.52214 * 214.97756 * 9 7 5 30 30 H 1.00900 * 110.99642 * 12.44076 * 12 10 9 31 31 H 1.09004 * 109.47048 * 60.00131 * 13 12 10 32 32 H 1.08997 * 109.46845 * 300.00295 * 13 12 10 33 33 H 1.09004 * 109.47139 * 60.00240 * 14 13 12 34 34 H 1.08997 * 109.47675 * 299.99840 * 14 13 12 35 35 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2365 -1.1207 0.7654 6 1 3.1711 -0.8745 1.2692 7 6 1.3588 -2.1560 1.4717 8 1 1.0288 -2.9921 0.8550 9 6 1.6470 -2.4374 2.9477 10 6 0.3973 -1.6501 2.5489 11 1 0.3898 -0.5797 2.7548 12 7 -0.8999 -2.3282 2.6730 13 6 -1.9047 -1.4374 3.2688 14 6 -3.2393 -2.1770 3.3809 15 6 -4.2699 -1.2634 3.9926 16 1 -4.0002 -0.2559 4.2730 17 6 -5.5574 -1.7138 4.1944 18 7 -6.4570 -0.9163 4.7278 19 14 -6.0240 -3.4565 3.7103 20 1 -5.7899 -4.3688 4.8585 21 1 -5.1939 -3.8890 2.5573 22 1 -7.4589 -3.4974 3.3301 23 1 -0.3633 0.0776 1.0248 24 1 -0.3634 0.8487 -0.5795 25 1 -0.3633 -0.9262 -0.4450 26 1 3.1720 -0.8751 -1.2676 27 1 1.6120 -1.8585 -1.2682 28 1 2.4623 -1.8853 3.4155 29 1 1.5068 -3.4584 3.3026 30 1 -0.8125 -3.1813 3.2045 31 1 -2.0294 -0.5571 2.6381 32 1 -1.5748 -1.1297 4.2610 33 1 -3.1150 -3.0575 4.0113 34 1 -3.5690 -2.4843 2.3885 35 1 -7.3627 -1.2333 4.8701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716545150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = 16.008191 kcal Electronic energy + Delta-G solvation = -13523.871891 eV Core-core repulsion = 11328.990522 eV Total energy + Delta-G solvation = -2194.881369 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05064 -37.55516 -35.70963 -34.14459 -30.97039 -29.33834 -26.02433 -24.33581 -22.43767 -22.31068 -22.04194 -19.97459 -18.97400 -16.77974 -16.59985 -16.30911 -16.16115 -15.35925 -14.76255 -14.48312 -14.21490 -13.72684 -13.59463 -13.25895 -13.07147 -12.87321 -12.32764 -12.25967 -12.10047 -11.91770 -11.84204 -11.57774 -11.42313 -11.32510 -10.79194 -10.74717 -10.31808 -9.05430 -8.30599 -6.35328 1.36035 1.38794 1.51732 2.36341 2.66797 3.05032 3.07884 3.22184 3.78759 3.92703 4.00823 4.16973 4.24085 4.40134 4.48819 4.50423 4.58930 4.64539 4.79200 4.91422 4.93844 4.98580 5.01062 5.02774 5.24392 5.31854 5.33105 5.40310 5.48160 5.52922 5.63051 6.17809 6.24966 6.51145 6.73239 7.29675 8.86167 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006025 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.905332 B = 4646.317320 C = 4819.483783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.155 4.155 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.124 4.124 6 H 0.116 0.884 7 C -0.106 4.106 8 H 0.098 0.902 9 C -0.187 4.187 10 C 0.020 3.980 11 H 0.099 0.901 12 N -0.663 5.663 13 C 0.092 3.908 14 C -0.004 4.004 15 C -0.534 4.534 16 H 0.032 0.968 17 C 0.006 3.994 18 N -0.951 5.951 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.249 1.249 22 H -0.284 1.284 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.343 0.657 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.586 -3.335 -8.438 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 H 0.129 0.871 4 C -0.202 4.202 5 C -0.143 4.143 6 H 0.134 0.866 7 C -0.125 4.125 8 H 0.116 0.884 9 C -0.225 4.225 10 C -0.091 4.091 11 H 0.116 0.884 12 N -0.293 5.293 13 C -0.037 4.037 14 C -0.042 4.042 15 C -0.573 4.573 16 H 0.050 0.950 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.172 1.172 22 H -0.209 1.209 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.162 0.838 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.194 -3.183 -9.027 20.558 hybrid contribution -0.520 -0.275 1.029 1.185 sum 17.674 -3.457 -7.998 19.705 Atomic orbital electron populations 1.21314 0.93595 1.01269 1.01459 1.22382 0.94871 0.94763 1.05277 0.87114 1.23164 1.02710 1.01035 0.93268 1.21873 0.99819 0.98691 0.93886 0.86641 1.21904 0.99958 0.99811 0.90874 0.88424 1.23622 0.99816 1.01662 0.97445 1.22486 0.85278 0.96879 1.04420 0.88363 1.60233 1.05781 1.07541 1.55715 1.21625 0.91157 0.95279 0.95646 1.19435 0.92852 0.95574 0.96345 1.21397 0.95473 0.99643 1.40765 0.94997 1.25994 0.96212 1.02465 0.94387 1.70066 1.04380 1.38672 1.46026 0.85605 0.77471 0.79233 0.79999 1.18974 1.17244 1.20927 0.93253 0.92384 0.93426 0.87244 0.89278 0.87538 0.88132 0.83782 0.92710 0.96401 0.96271 0.95986 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.97 71.98 0.65 -2.38 16 2 C -0.15 -3.19 6.39 -10.79 -0.07 -3.26 16 3 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 4 C -0.16 -2.98 9.90 30.60 0.30 -2.67 16 5 C -0.12 -2.46 5.87 -10.79 -0.06 -2.52 16 6 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 7 C -0.11 -2.44 5.18 -10.80 -0.06 -2.49 16 8 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 9 C -0.19 -3.99 9.95 30.59 0.30 -3.69 16 10 C 0.02 0.54 4.33 44.91 0.19 0.74 16 11 H 0.10 2.85 7.05 -2.38 -0.02 2.83 16 12 N -0.66 -21.78 6.78 -491.59 -3.33 -25.12 16 13 C 0.09 3.73 5.48 86.30 0.47 4.20 16 14 C 0.00 -0.20 4.30 29.85 0.13 -0.08 16 15 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 16 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 17 C 0.01 0.38 5.47 84.65 0.46 0.84 16 18 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 19 Si 0.95 45.01 27.47 68.60 1.88 46.90 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H 0.05 1.43 5.95 -2.38 -0.01 1.42 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.29 7.90 -2.39 -0.02 1.27 16 26 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.71 8.05 -2.39 -0.02 1.70 16 28 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16 30 H 0.34 10.43 8.52 -89.69 -0.76 9.67 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 34 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -64.51 286.22 1.65 -62.86 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.23 Total: 17.95 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 2.57 Total: -42.52 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.03 Total: -85.19 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -64.51 1.65 -62.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716545150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.869 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds