Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47260 * 2 1 4 4 C 1.50709 * 109.46744 * 240.00265 * 2 1 3 5 5 H 1.08003 * 120.00045 * 239.99863 * 4 2 1 6 6 C 1.37876 * 119.99729 * 60.00253 * 4 2 1 7 7 N 1.31507 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99639 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47011 * 89.99858 * 8 6 4 10 10 H 1.48503 * 109.46888 * 209.99859 * 8 6 4 11 11 H 1.48499 * 109.47161 * 330.00119 * 8 6 4 12 12 N 1.46899 * 109.47067 * 120.00739 * 2 1 3 13 13 C 1.46896 * 110.99893 * 274.99267 * 12 2 1 14 14 H 1.09009 * 115.54944 * 9.33398 * 13 12 2 15 15 C 1.52998 * 117.52461 * 223.63104 * 13 12 2 16 16 C 1.53001 * 60.00272 * 252.52071 * 15 13 12 17 17 H 1.08998 * 117.51550 * 252.51608 * 16 15 13 18 18 C 1.52996 * 117.50088 * 107.48478 * 16 15 13 19 19 H 1.09002 * 115.54951 * 16.96313 * 18 16 15 20 20 C 1.53002 * 117.49888 * 162.63339 * 18 16 15 21 21 C 1.53000 * 117.50107 * 231.29101 * 18 16 15 22 22 H 1.09008 * 117.49673 * 359.97438 * 21 18 16 23 23 C 1.52996 * 117.49997 * 144.99643 * 21 18 16 24 24 H 1.08997 * 109.47773 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47063 * 299.99700 * 1 2 3 26 26 H 1.08998 * 109.47608 * 59.99419 * 1 2 3 27 27 H 0.97005 * 120.00428 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00657 * 38.95046 * 12 2 1 29 29 H 1.08999 * 117.50579 * 145.02821 * 15 13 12 30 30 H 1.09007 * 117.49702 * 0.02562 * 15 13 12 31 31 H 1.09000 * 117.49996 * 215.00804 * 20 18 16 32 32 H 1.08999 * 117.49664 * 0.02562 * 20 18 16 33 33 H 1.08998 * 109.46891 * 60.00532 * 23 21 18 34 34 H 1.09002 * 109.47340 * 179.97438 * 23 21 18 35 35 H 1.08996 * 109.47632 * 300.00410 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4870 -0.1399 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 7 2.0196 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 1 1.6223 1.1988 2.1953 15 6 3.3266 0.1580 3.2350 16 6 1.9930 -0.3914 3.7455 17 1 1.4737 0.1811 4.5141 18 6 1.8455 -1.9112 3.8419 19 1 2.7771 -2.4764 3.8175 20 6 0.7106 -2.4571 4.7108 21 6 0.6173 -2.5448 3.1855 22 1 -0.0859 -1.8788 2.6853 23 6 0.7908 -3.9233 2.5449 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.7086 1.1615 -3.4844 28 1 1.4495 -1.4981 1.4099 29 1 3.6850 1.0920 3.6678 30 1 4.0991 -0.5632 2.9678 31 1 0.8956 -3.3814 5.2580 32 1 0.0688 -1.7334 5.2134 33 1 1.1134 -4.6378 3.3021 34 1 -0.1588 -4.2487 2.1200 35 1 1.5413 -3.8658 1.7565 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716547018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = 38.681671 kcal Electronic energy + Delta-G solvation = -14092.611414 eV Core-core repulsion = 11898.713241 eV Total energy + Delta-G solvation = -2193.898173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.81259 -35.92749 -34.18397 -31.57633 -28.40081 -27.20508 -25.09420 -23.26652 -21.18301 -20.75812 -19.94773 -19.20797 -16.28202 -15.43178 -14.96225 -14.47399 -13.94268 -13.84491 -12.94641 -12.66176 -12.45956 -12.20194 -11.85220 -11.47041 -11.24187 -10.97199 -10.93638 -10.89229 -10.57099 -10.38989 -10.23996 -10.08544 -9.79945 -9.60439 -9.04450 -8.85232 -8.33073 -7.08150 -5.95620 -3.98522 3.34242 3.40485 3.45414 3.88911 4.36263 4.46016 4.79208 5.03496 5.16228 5.18479 5.36047 5.54121 5.55293 5.65996 5.76120 5.92113 5.97548 6.04746 6.09097 6.24089 6.32689 6.39382 6.41806 6.58793 6.66724 6.72689 6.87967 7.14029 7.43716 7.77870 7.93762 8.33376 8.62677 8.69337 9.08798 9.66631 11.11592 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036434 B = 0.008410 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.328481 B = 3328.616781 C = 3613.984360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.655 5.655 13 C 0.043 3.957 14 H 0.089 0.911 15 C -0.170 4.170 16 C -0.152 4.152 17 H 0.096 0.904 18 C -0.104 4.104 19 H 0.103 0.897 20 C -0.180 4.180 21 C -0.151 4.151 22 H 0.103 0.897 23 C -0.123 4.123 24 H 0.026 0.974 25 H 0.004 0.996 26 H 0.089 0.911 27 H 0.259 0.741 28 H 0.335 0.665 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -4.530 11.385 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.287 5.287 13 C -0.069 4.069 14 H 0.107 0.893 15 C -0.209 4.209 16 C -0.172 4.172 17 H 0.114 0.886 18 C -0.122 4.122 19 H 0.121 0.879 20 C -0.217 4.217 21 C -0.169 4.169 22 H 0.121 0.879 23 C -0.180 4.180 24 H 0.045 0.955 25 H 0.023 0.977 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.158 0.842 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.148 -4.354 11.040 11.869 hybrid contribution -0.703 -0.196 -0.616 0.955 sum -0.554 -4.550 10.424 11.388 Atomic orbital electron populations 1.22458 1.00778 0.99084 1.00450 1.19244 0.89506 0.94466 0.86435 0.94803 1.21143 1.30105 1.12353 0.89597 0.92016 1.24942 0.95390 0.95210 0.99001 1.69882 1.37414 1.23205 1.23282 0.86521 0.79247 0.79240 0.82520 1.20868 1.21375 1.19876 1.60532 1.57593 1.08536 1.02032 1.22484 0.99916 0.97168 0.87347 0.89324 1.23144 0.91689 1.01924 1.04144 1.22075 1.02791 0.93276 0.99049 0.88615 1.21647 0.93294 0.93480 1.03811 0.87864 1.23135 1.02617 1.02567 0.93348 1.22365 1.01366 0.98853 0.94317 0.87911 1.21374 1.02202 0.93955 1.00491 0.95467 0.97689 0.89270 0.93108 0.84246 0.89686 0.88673 0.89196 0.89316 0.93035 0.92324 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.15 0.33 -3.78 16 2 C 0.21 5.42 2.47 -68.86 -0.17 5.25 16 3 H 0.03 0.96 7.73 -51.93 -0.40 0.55 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.95 11.32 55.43 0.63 -25.32 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.65 -14.33 6.29 -100.95 -0.64 -14.97 16 13 C 0.04 0.81 5.94 -67.71 -0.40 0.40 16 14 H 0.09 1.72 7.77 -51.92 -0.40 1.32 16 15 C -0.17 -2.75 10.18 -26.73 -0.27 -3.03 16 16 C -0.15 -2.35 5.87 -90.62 -0.53 -2.88 16 17 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.10 -1.50 5.09 -90.62 -0.46 -1.96 16 19 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 20 C -0.18 -2.23 9.90 -26.69 -0.26 -2.49 16 21 C -0.15 -2.17 4.07 -90.59 -0.37 -2.54 16 22 H 0.10 1.66 7.74 -51.92 -0.40 1.25 16 23 C -0.12 -1.64 10.11 37.16 0.38 -1.27 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.00 0.09 8.07 -51.92 -0.42 -0.33 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.34 6.93 4.99 -39.29 -0.20 6.73 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.09 0.98 8.05 -51.93 -0.42 0.57 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -28.37 284.73 -8.79 -37.16 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.89 Total: 7.15 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -2.16 Total: -25.01 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.01 Total: -40.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.37 -8.79 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716547018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.845 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds