Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47260 * 2 1 4 4 C 1.50709 * 109.46744 * 240.00265 * 2 1 3 5 5 H 1.08003 * 120.00045 * 239.99863 * 4 2 1 6 6 C 1.37876 * 119.99729 * 60.00253 * 4 2 1 7 7 N 1.31507 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99639 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47011 * 89.99858 * 8 6 4 10 10 H 1.48503 * 109.46888 * 209.99859 * 8 6 4 11 11 H 1.48499 * 109.47161 * 330.00119 * 8 6 4 12 12 N 1.46899 * 109.47067 * 120.00739 * 2 1 3 13 13 C 1.46896 * 110.99893 * 274.99267 * 12 2 1 14 14 H 1.09009 * 115.54944 * 9.33398 * 13 12 2 15 15 C 1.52998 * 117.52461 * 223.63104 * 13 12 2 16 16 C 1.53001 * 60.00272 * 252.52071 * 15 13 12 17 17 H 1.08998 * 117.51550 * 252.51608 * 16 15 13 18 18 C 1.52996 * 117.50088 * 107.48478 * 16 15 13 19 19 H 1.09002 * 115.54951 * 16.96313 * 18 16 15 20 20 C 1.53002 * 117.49888 * 162.63339 * 18 16 15 21 21 C 1.53000 * 117.50107 * 231.29101 * 18 16 15 22 22 H 1.09008 * 117.49673 * 359.97438 * 21 18 16 23 23 C 1.52996 * 117.49997 * 144.99643 * 21 18 16 24 24 H 1.08997 * 109.47773 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47063 * 299.99700 * 1 2 3 26 26 H 1.08998 * 109.47608 * 59.99419 * 1 2 3 27 27 H 0.97005 * 120.00428 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00657 * 38.95046 * 12 2 1 29 29 H 1.08999 * 117.50579 * 145.02821 * 15 13 12 30 30 H 1.09007 * 117.49702 * 0.02562 * 15 13 12 31 31 H 1.09000 * 117.49996 * 215.00804 * 20 18 16 32 32 H 1.08999 * 117.49664 * 0.02562 * 20 18 16 33 33 H 1.08998 * 109.46891 * 60.00532 * 23 21 18 34 34 H 1.09002 * 109.47340 * 179.97438 * 23 21 18 35 35 H 1.08996 * 109.47632 * 300.00410 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4870 -0.1399 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 7 2.0196 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 1 1.6223 1.1988 2.1953 15 6 3.3266 0.1580 3.2350 16 6 1.9930 -0.3914 3.7455 17 1 1.4737 0.1811 4.5141 18 6 1.8455 -1.9112 3.8419 19 1 2.7771 -2.4764 3.8175 20 6 0.7106 -2.4571 4.7108 21 6 0.6173 -2.5448 3.1855 22 1 -0.0859 -1.8788 2.6853 23 6 0.7908 -3.9233 2.5449 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.7086 1.1615 -3.4844 28 1 1.4495 -1.4981 1.4099 29 1 3.6850 1.0920 3.6678 30 1 4.0991 -0.5632 2.9678 31 1 0.8956 -3.3814 5.2580 32 1 0.0688 -1.7334 5.2134 33 1 1.1134 -4.6378 3.3021 34 1 -0.1588 -4.2487 2.1200 35 1 1.5413 -3.8658 1.7565 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716547018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = 22.792896 kcal Electronic energy + Delta-G solvation = -14093.300403 eV Core-core repulsion = 11898.713241 eV Total energy + Delta-G solvation = -2194.587162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.09917 -37.40469 -35.90850 -33.56474 -29.66310 -28.90316 -27.24164 -24.42541 -22.83047 -22.08272 -21.46543 -20.52493 -18.33205 -17.01091 -16.54811 -16.09452 -15.37045 -15.07719 -14.63467 -14.43614 -13.92046 -13.64560 -13.35664 -12.93201 -12.87848 -12.76937 -12.45144 -12.35806 -12.20428 -12.08103 -11.97022 -11.73252 -11.32667 -11.02002 -10.72705 -10.49787 -10.23084 -8.78576 -8.10068 -6.21412 1.42207 1.42873 1.54256 2.43506 2.71998 3.12750 3.17962 3.45526 3.81117 3.97216 4.01204 4.28084 4.43377 4.46418 4.54331 4.60783 4.70697 4.80341 4.90710 4.94297 4.97740 5.00072 5.02596 5.12391 5.25143 5.34865 5.40316 5.44139 5.48113 5.68274 5.83626 6.28189 6.68962 6.88105 6.98438 7.48767 8.95722 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036434 B = 0.008410 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.328481 B = 3328.616781 C = 3613.984360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.217 3.783 3 H -0.001 1.001 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.659 5.659 13 C 0.004 3.996 14 H 0.076 0.924 15 C -0.160 4.160 16 C -0.125 4.125 17 H 0.116 0.884 18 C -0.120 4.120 19 H 0.103 0.897 20 C -0.150 4.150 21 C -0.167 4.167 22 H 0.081 0.919 23 C -0.120 4.120 24 H 0.029 0.971 25 H 0.022 0.978 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.340 0.660 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -5.605 12.713 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.291 5.291 13 C -0.108 4.108 14 H 0.094 0.906 15 C -0.199 4.199 16 C -0.144 4.144 17 H 0.134 0.866 18 C -0.139 4.139 19 H 0.121 0.879 20 C -0.187 4.187 21 C -0.185 4.185 22 H 0.099 0.901 23 C -0.178 4.178 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.283 -5.433 12.391 13.532 hybrid contribution -0.746 0.166 -0.971 1.236 sum -0.463 -5.267 11.419 12.584 Atomic orbital electron populations 1.22243 1.00070 0.98996 0.99941 1.18978 0.89929 0.92620 0.87639 0.98266 1.21421 1.30449 1.12411 0.91063 0.92890 1.25729 0.95464 0.95879 1.01902 1.70009 1.38051 1.24241 1.24007 0.85510 0.78809 0.78252 0.78770 1.19970 1.20848 1.19541 1.60421 1.57458 1.09024 1.02175 1.22493 1.03256 0.96710 0.88320 0.90611 1.23195 0.91270 1.02837 1.02568 1.22164 1.01593 0.94171 0.96453 0.86568 1.21694 0.93818 0.92743 1.05613 0.87869 1.23222 1.00338 1.03299 0.91806 1.22333 1.01029 0.98913 0.96243 0.90083 1.21349 1.01838 0.94070 1.00503 0.95189 0.95939 0.91853 0.92968 0.83735 0.87561 0.89312 0.86998 0.88252 0.90884 0.91963 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.64 8.94 71.98 0.64 -7.00 16 2 C 0.22 11.46 2.47 44.17 0.11 11.57 16 3 H 0.00 -0.04 7.73 -2.39 -0.02 -0.05 16 4 C -0.51 -29.51 8.84 25.60 0.23 -29.29 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.47 5.30 84.66 0.45 0.92 16 7 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 8 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.66 -29.29 6.29 -473.30 -2.98 -32.26 16 13 C 0.00 0.13 5.94 44.92 0.27 0.40 16 14 H 0.08 3.01 7.77 -2.38 -0.02 2.99 16 15 C -0.16 -4.96 10.18 30.59 0.31 -4.65 16 16 C -0.12 -3.59 5.87 -10.79 -0.06 -3.66 16 17 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.12 -3.21 5.09 -10.79 -0.05 -3.27 16 19 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 20 C -0.15 -3.20 9.90 30.62 0.30 -2.90 16 21 C -0.17 -4.54 4.07 -10.77 -0.04 -4.58 16 22 H 0.08 2.57 7.74 -2.38 -0.02 2.55 16 23 C -0.12 -3.06 10.11 71.98 0.73 -2.33 16 24 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 25 H 0.02 0.99 8.07 -2.38 -0.02 0.97 16 26 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 27 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 28 H 0.34 14.21 4.99 -89.69 -0.45 13.77 16 29 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.11 1.95 8.05 -2.39 -0.02 1.93 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -61.08 284.73 2.76 -58.32 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.60 Total: 25.94 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 2.87 Total: -44.78 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.73 Total: -86.25 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.08 2.76 -58.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716547018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.109 kcal (2) G-P(sol) polarization free energy of solvation -61.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds