Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 5 5 H 1.08003 * 119.99962 * 239.99845 * 4 2 1 6 6 C 1.37873 * 119.99861 * 60.00233 * 4 2 1 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46946 * 59.99897 * 8 6 4 10 10 H 1.48506 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99580 * 8 6 4 12 12 N 1.46906 * 109.46907 * 119.99770 * 2 1 3 13 13 C 1.46902 * 110.99927 * 274.99822 * 12 2 1 14 14 H 1.09001 * 115.54856 * 9.33203 * 13 12 2 15 15 C 1.52994 * 117.50076 * 223.61942 * 13 12 2 16 16 C 1.52993 * 60.00315 * 252.51296 * 15 13 12 17 17 H 1.08994 * 117.50029 * 252.50810 * 16 15 13 18 18 C 1.52998 * 117.51760 * 107.47810 * 16 15 13 19 19 H 1.09000 * 115.55438 * 325.65360 * 18 16 15 20 20 C 1.53001 * 117.50169 * 179.97438 * 18 16 15 21 21 C 1.52995 * 60.00305 * 252.50981 * 20 18 16 22 22 H 1.08994 * 117.50233 * 252.50815 * 21 20 18 23 23 C 1.53009 * 117.49531 * 107.48257 * 21 20 18 24 24 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 25 25 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99374 * 151.04935 * 12 2 1 29 29 H 1.08998 * 117.49850 * 0.02562 * 15 13 12 30 30 H 1.09003 * 117.49869 * 145.01710 * 15 13 12 31 31 H 1.08999 * 117.49411 * 0.02562 * 20 18 16 32 32 H 1.09003 * 117.49774 * 144.99908 * 20 18 16 33 33 H 1.08997 * 109.47144 * 351.38175 * 23 21 20 34 34 H 1.09005 * 109.46643 * 111.38283 * 23 21 20 35 35 H 1.08994 * 109.47223 * 231.37550 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.6222 1.1991 2.1952 15 6 3.3265 0.1579 3.2350 16 6 1.9928 -0.3909 3.7457 17 1 1.4741 0.1819 4.5143 18 6 1.8442 -1.9106 3.8422 19 1 2.3622 -2.4835 3.0731 20 6 0.5105 -2.4590 4.3535 21 6 1.7550 -2.5243 5.2409 22 1 2.2146 -3.5010 5.3922 23 6 1.8213 -1.5712 6.4360 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1612 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 4.0987 -0.5635 2.9677 30 1 3.6853 1.0919 3.6676 31 1 -0.2612 -1.7370 4.6207 32 1 0.1510 -3.3926 3.9206 33 1 0.9967 -0.8605 6.3801 34 1 1.7464 -2.1428 7.3611 35 1 2.7680 -1.0314 6.4182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716547020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = 22.450671 kcal Electronic energy + Delta-G solvation = -13788.917492 eV Core-core repulsion = 11594.315490 eV Total energy + Delta-G solvation = -2194.602002 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88188 -37.65526 -35.81869 -33.38924 -29.36918 -29.23702 -27.27403 -24.43466 -22.88232 -22.20113 -21.51368 -19.58368 -18.50664 -17.11801 -16.62287 -16.13193 -15.61505 -15.00909 -14.37884 -14.31245 -13.87686 -13.46771 -13.23429 -13.15714 -12.83725 -12.66783 -12.59715 -12.27949 -12.23318 -12.11492 -11.84537 -11.71813 -11.48934 -10.92592 -10.63863 -10.51361 -10.11020 -8.78573 -8.13369 -6.27940 1.42278 1.44437 1.51998 2.41259 2.71774 3.14885 3.32132 3.55233 3.75557 3.99649 4.04844 4.38536 4.43225 4.50548 4.56771 4.60336 4.82153 4.88483 4.97298 5.01000 5.04792 5.06460 5.11005 5.23025 5.27137 5.34742 5.49524 5.51638 5.56940 5.68518 5.86523 6.21269 6.49444 6.79278 7.00319 7.42584 8.92187 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051764 B = 0.006571 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.782354 B = 4260.110458 C = 4311.588036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.219 3.781 3 H -0.031 1.031 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.647 5.647 13 C 0.011 3.989 14 H 0.085 0.915 15 C -0.188 4.188 16 C -0.102 4.102 17 H 0.109 0.891 18 C -0.111 4.111 19 H 0.088 0.912 20 C -0.177 4.177 21 C -0.145 4.145 22 H 0.107 0.893 23 C -0.117 4.117 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.025 0.975 27 H 0.263 0.737 28 H 0.331 0.669 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -3.679 13.806 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.276 5.276 13 C -0.100 4.100 14 H 0.103 0.897 15 C -0.227 4.227 16 C -0.121 4.121 17 H 0.127 0.873 18 C -0.129 4.129 19 H 0.107 0.893 20 C -0.214 4.214 21 C -0.163 4.163 22 H 0.125 0.875 23 C -0.174 4.174 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.812 -3.811 13.810 14.440 hybrid contribution 0.798 0.341 -1.395 1.642 sum 2.610 -3.470 12.415 13.153 Atomic orbital electron populations 1.21512 0.97846 0.98656 0.98776 1.18912 0.92586 0.90732 0.86707 1.01294 1.21551 1.31807 1.12737 0.91664 0.92337 1.25738 0.95121 0.95662 1.02055 1.70021 1.37382 1.24080 1.24252 0.85529 0.78736 0.78605 0.78242 1.19712 1.20866 1.19521 1.60365 1.31253 1.31496 1.04495 1.22553 1.02166 0.95876 0.89454 0.89708 1.23480 0.91400 1.03132 1.04645 1.21946 0.99861 0.93940 0.96351 0.87296 1.21500 1.01367 0.93161 0.96891 0.89332 1.23026 0.91532 1.02545 1.04270 1.22485 1.01396 1.00861 0.91590 0.87458 1.21325 1.01871 0.98192 0.95968 0.96242 0.92520 0.95575 0.92810 0.85042 0.88837 0.87642 0.89197 0.89311 0.92807 0.91189 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 9.19 71.98 0.66 -5.00 16 2 C 0.22 11.46 2.50 44.17 0.11 11.57 16 3 H -0.03 -1.76 7.73 -2.39 -0.02 -1.78 16 4 C -0.54 -30.09 8.59 25.60 0.22 -29.87 16 5 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 N -0.65 -28.11 5.76 -473.31 -2.73 -30.83 16 13 C 0.01 0.40 6.00 44.91 0.27 0.67 16 14 H 0.08 3.34 7.77 -2.39 -0.02 3.32 16 15 C -0.19 -5.44 9.95 30.59 0.30 -5.13 16 16 C -0.10 -2.98 5.18 -10.80 -0.06 -3.04 16 17 H 0.11 2.88 7.19 -2.39 -0.02 2.87 16 18 C -0.11 -3.18 5.41 -10.79 -0.06 -3.24 16 19 H 0.09 2.86 7.87 -2.39 -0.02 2.84 16 20 C -0.18 -4.66 9.90 30.59 0.30 -4.36 16 21 C -0.15 -3.29 6.41 -10.79 -0.07 -3.36 16 22 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 23 C -0.12 -2.18 9.04 71.99 0.65 -1.53 16 24 H 0.02 0.89 8.07 -2.39 -0.02 0.88 16 25 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.33 14.12 8.01 -89.69 -0.72 13.40 16 29 H 0.09 2.67 8.09 -2.39 -0.02 2.65 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.05 1.02 7.40 -2.39 -0.02 1.00 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -59.33 286.45 2.66 -56.68 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.33 Total: 23.76 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 2.79 Total: -42.10 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -2.48 Total: -84.15 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -59.33 2.66 -56.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716547020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.126 kcal (2) G-P(sol) polarization free energy of solvation -59.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds