Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.54257 * 2 1 4 4 C 1.53002 * 117.49991 * 214.29695 * 2 1 3 5 5 C 1.52997 * 117.50285 * 145.67099 * 2 1 3 6 6 H 1.08997 * 117.49780 * 215.00805 * 5 2 1 7 7 C 1.53000 * 117.49851 * 0.02562 * 5 2 1 8 8 H 1.09005 * 115.56249 * 327.40219 * 7 5 2 9 9 C 1.52997 * 117.50078 * 113.08925 * 7 5 2 10 10 C 1.53000 * 117.49929 * 181.71351 * 7 5 2 11 11 H 1.09002 * 117.49852 * 145.02074 * 10 7 5 12 12 C 1.52993 * 117.49756 * 0.02562 * 10 7 5 13 13 N 1.46504 * 109.47166 * 170.97089 * 12 10 7 14 14 C 1.46506 * 119.99494 * 269.99744 * 13 12 10 15 15 C 1.36927 * 120.00425 * 89.99605 * 13 12 10 16 16 H 1.08002 * 120.00400 * 23.75165 * 15 13 12 17 17 C 1.38813 * 120.00115 * 203.75764 * 15 13 12 18 18 N 1.31617 * 120.00133 * 11.42838 * 17 15 13 19 19 Si 1.86802 * 120.00006 * 191.43510 * 17 15 13 20 20 H 1.48500 * 109.47174 * 89.99893 * 19 17 15 21 21 H 1.48500 * 109.47079 * 209.99724 * 19 17 15 22 22 H 1.48500 * 109.47266 * 329.99471 * 19 17 15 23 23 H 1.09002 * 109.47087 * 279.38120 * 1 2 3 24 24 H 1.08994 * 109.47835 * 39.38644 * 1 2 3 25 25 H 1.09007 * 109.46917 * 159.38771 * 1 2 3 26 26 H 1.08995 * 117.49915 * 145.01753 * 4 2 1 27 27 H 1.08997 * 117.49920 * 359.97438 * 4 2 1 28 28 H 1.09005 * 117.49445 * 0.02562 * 9 7 5 29 29 H 1.08995 * 117.52314 * 214.97036 * 9 7 5 30 30 H 1.09000 * 109.46915 * 290.96411 * 12 10 7 31 31 H 1.08997 * 109.47630 * 50.96074 * 12 10 7 32 32 H 1.08994 * 109.47256 * 95.11009 * 14 13 12 33 33 H 1.09001 * 109.46682 * 215.10870 * 14 13 12 34 34 H 1.08998 * 109.46751 * 335.10751 * 14 13 12 35 35 H 0.96997 * 120.00165 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1714 -0.8745 1.2689 7 6 1.3590 -2.1560 1.4716 8 1 0.4104 -1.7834 1.8582 9 6 1.3903 -3.5899 0.9389 10 6 2.0650 -3.2536 2.2703 11 1 1.5809 -3.6030 3.1822 12 6 3.5945 -3.2314 2.3020 13 7 4.0770 -4.2126 3.2770 14 6 4.2866 -3.8169 4.6720 15 6 4.3320 -5.4994 2.8846 16 1 4.5547 -5.7145 1.8499 17 6 4.3043 -6.5277 3.8168 18 7 3.8181 -6.3118 5.0206 19 14 4.9573 -8.2179 3.3626 20 1 6.4038 -8.2942 3.6900 21 1 4.2210 -9.2553 4.1287 22 1 4.7662 -8.4480 1.9080 23 1 -0.3633 0.1675 1.0139 24 1 -0.3634 0.7942 -0.6520 25 1 -0.3633 -0.9619 -0.3618 26 1 3.1715 -0.8755 -1.2681 27 1 1.6113 -1.8590 -1.2675 28 1 2.0364 -3.7957 0.0855 29 1 0.4626 -4.1610 0.9750 30 1 3.9820 -3.4802 1.3140 31 1 3.9377 -2.2369 2.5869 32 1 3.3998 -4.0619 5.2563 33 1 5.1468 -4.3510 5.0757 34 1 4.4694 -2.7435 4.7215 35 1 3.7991 -7.0302 5.6720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716599856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 62.277198 kcal Electronic energy + Delta-G solvation = -13885.299146 eV Core-core repulsion = 11692.424152 eV Total energy + Delta-G solvation = -2192.874994 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80121 -35.99926 -34.32877 -30.93634 -28.39842 -26.43513 -25.65547 -23.74888 -21.60812 -20.78096 -20.03375 -18.03987 -16.63590 -15.69504 -15.23340 -14.43278 -13.90724 -13.43296 -13.17843 -12.94737 -12.65421 -12.25764 -11.86543 -11.42189 -11.34394 -10.90730 -10.83125 -10.72528 -10.56449 -10.37543 -10.22287 -9.99514 -9.82429 -9.70978 -9.10329 -8.94750 -8.47261 -6.65562 -5.64034 -3.10740 3.42743 3.48685 3.50200 3.88541 4.38844 4.57741 4.87533 4.95343 5.15150 5.36485 5.38034 5.55536 5.57408 5.65060 5.82085 5.87861 5.91710 5.99833 6.06745 6.11564 6.28171 6.38087 6.42280 6.51683 6.64784 6.69581 6.73182 6.86277 7.17709 7.44405 7.82187 7.88374 8.49720 9.32992 9.96491 10.46318 11.40994 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053143 B = 0.006903 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.755022 B = 4055.236509 C = 4212.120203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.158 4.158 3 H 0.097 0.903 4 C -0.175 4.175 5 C -0.109 4.109 6 H 0.105 0.895 7 C -0.140 4.140 8 H 0.095 0.905 9 C -0.172 4.172 10 C -0.138 4.138 11 H 0.100 0.900 12 C 0.182 3.818 13 N -0.601 5.601 14 C 0.163 3.837 15 C -0.247 4.247 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.910 5.910 19 Si 0.903 3.097 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.040 0.960 34 H -0.003 1.003 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 10.303 -8.062 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.176 4.176 3 H 0.116 0.884 4 C -0.212 4.212 5 C -0.127 4.127 6 H 0.123 0.877 7 C -0.159 4.159 8 H 0.113 0.887 9 C -0.209 4.209 10 C -0.159 4.159 11 H 0.118 0.882 12 C 0.055 3.945 13 N -0.323 5.323 14 C 0.018 3.982 15 C -0.377 4.377 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.556 5.556 19 Si 0.733 3.267 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.205 1.205 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.015 0.985 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.512 10.177 -7.907 13.655 hybrid contribution 0.159 -1.069 -0.137 1.089 sum -4.353 9.108 -8.044 12.908 Atomic orbital electron populations 1.21290 0.93251 1.01586 1.01417 1.22322 0.95258 0.94165 1.05845 0.88441 1.23084 1.02082 1.01311 0.94710 1.21771 1.00072 0.98030 0.92849 0.87670 1.21748 0.99990 0.89042 1.05146 0.88690 1.22942 1.02388 0.96523 0.99030 1.23534 0.98843 0.98827 0.94661 0.88212 1.20422 0.88607 0.91993 0.93495 1.43971 1.75254 1.07487 1.05609 1.20788 1.00161 0.92222 0.84986 1.19204 1.40514 0.83342 0.94651 0.91547 1.25038 1.00246 0.97661 0.96842 1.70056 1.48686 1.31722 1.05151 0.86271 0.78449 0.84272 0.77669 1.21582 1.21816 1.20547 0.92392 0.92857 0.92411 0.89336 0.88849 0.89360 0.90104 0.93760 0.94195 0.95225 0.94146 0.98481 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.16 -1.85 6.41 -90.62 -0.58 -2.43 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.17 -2.17 9.43 -26.73 -0.25 -2.42 16 5 C -0.11 -1.53 5.32 -90.62 -0.48 -2.01 16 6 H 0.11 1.53 6.85 -51.93 -0.36 1.17 16 7 C -0.14 -2.21 5.24 -90.62 -0.47 -2.68 16 8 H 0.10 1.42 7.29 -51.93 -0.38 1.05 16 9 C -0.17 -2.95 9.43 -26.73 -0.25 -3.21 16 10 C -0.14 -2.71 6.01 -90.62 -0.54 -3.25 16 11 H 0.10 2.23 8.14 -51.93 -0.42 1.81 16 12 C 0.18 3.89 5.07 -4.04 -0.02 3.87 16 13 N -0.60 -15.63 2.92 -181.12 -0.53 -16.16 16 14 C 0.16 4.16 9.02 59.85 0.54 4.70 16 15 C -0.25 -6.99 9.66 -15.06 -0.15 -7.13 16 16 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 17 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 18 N -0.91 -27.16 10.67 55.49 0.59 -26.57 16 19 Si 0.90 22.35 29.57 -169.99 -5.03 17.32 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.17 7.89 -51.93 -0.41 0.76 16 28 H 0.09 1.50 7.84 -51.93 -0.41 1.10 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.94 7.76 -51.93 -0.40 0.54 16 31 H 0.04 0.79 6.86 -51.93 -0.36 0.43 16 32 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 33 H 0.04 1.09 7.35 -51.93 -0.38 0.71 16 34 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 283.72 15.07 4.28 4.28 Total: -1.00 -29.57 283.72 -8.61 -38.18 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.96 Total: -1.46 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.97 Total: -15.59 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.06 Total: -42.73 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.57 -8.61 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.456 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds