Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.54257 * 2 1 4 4 C 1.53002 * 117.49991 * 214.29695 * 2 1 3 5 5 C 1.52997 * 117.50285 * 145.67099 * 2 1 3 6 6 H 1.08997 * 117.49780 * 215.00805 * 5 2 1 7 7 C 1.53000 * 117.49851 * 0.02562 * 5 2 1 8 8 H 1.09005 * 115.56249 * 327.40219 * 7 5 2 9 9 C 1.52997 * 117.50078 * 113.08925 * 7 5 2 10 10 C 1.53000 * 117.49929 * 181.71351 * 7 5 2 11 11 H 1.09002 * 117.49852 * 145.02074 * 10 7 5 12 12 C 1.52993 * 117.49756 * 0.02562 * 10 7 5 13 13 N 1.46504 * 109.47166 * 170.97089 * 12 10 7 14 14 C 1.46506 * 119.99494 * 269.99744 * 13 12 10 15 15 C 1.36927 * 120.00425 * 89.99605 * 13 12 10 16 16 H 1.08002 * 120.00400 * 23.75165 * 15 13 12 17 17 C 1.38813 * 120.00115 * 203.75764 * 15 13 12 18 18 N 1.31617 * 120.00133 * 11.42838 * 17 15 13 19 19 Si 1.86802 * 120.00006 * 191.43510 * 17 15 13 20 20 H 1.48500 * 109.47174 * 89.99893 * 19 17 15 21 21 H 1.48500 * 109.47079 * 209.99724 * 19 17 15 22 22 H 1.48500 * 109.47266 * 329.99471 * 19 17 15 23 23 H 1.09002 * 109.47087 * 279.38120 * 1 2 3 24 24 H 1.08994 * 109.47835 * 39.38644 * 1 2 3 25 25 H 1.09007 * 109.46917 * 159.38771 * 1 2 3 26 26 H 1.08995 * 117.49915 * 145.01753 * 4 2 1 27 27 H 1.08997 * 117.49920 * 359.97438 * 4 2 1 28 28 H 1.09005 * 117.49445 * 0.02562 * 9 7 5 29 29 H 1.08995 * 117.52314 * 214.97036 * 9 7 5 30 30 H 1.09000 * 109.46915 * 290.96411 * 12 10 7 31 31 H 1.08997 * 109.47630 * 50.96074 * 12 10 7 32 32 H 1.08994 * 109.47256 * 95.11009 * 14 13 12 33 33 H 1.09001 * 109.46682 * 215.10870 * 14 13 12 34 34 H 1.08998 * 109.46751 * 335.10751 * 14 13 12 35 35 H 0.96997 * 120.00165 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1714 -0.8745 1.2689 7 6 1.3590 -2.1560 1.4716 8 1 0.4104 -1.7834 1.8582 9 6 1.3903 -3.5899 0.9389 10 6 2.0650 -3.2536 2.2703 11 1 1.5809 -3.6030 3.1822 12 6 3.5945 -3.2314 2.3020 13 7 4.0770 -4.2126 3.2770 14 6 4.2866 -3.8169 4.6720 15 6 4.3320 -5.4994 2.8846 16 1 4.5547 -5.7145 1.8499 17 6 4.3043 -6.5277 3.8168 18 7 3.8181 -6.3118 5.0206 19 14 4.9573 -8.2179 3.3626 20 1 6.4038 -8.2942 3.6900 21 1 4.2210 -9.2553 4.1287 22 1 4.7662 -8.4480 1.9080 23 1 -0.3633 0.1675 1.0139 24 1 -0.3634 0.7942 -0.6520 25 1 -0.3633 -0.9619 -0.3618 26 1 3.1715 -0.8755 -1.2681 27 1 1.6113 -1.8590 -1.2675 28 1 2.0364 -3.7957 0.0855 29 1 0.4626 -4.1610 0.9750 30 1 3.9820 -3.4802 1.3140 31 1 3.9377 -2.2369 2.5869 32 1 3.3998 -4.0619 5.2563 33 1 5.1468 -4.3510 5.0757 34 1 4.4694 -2.7435 4.7215 35 1 3.7991 -7.0302 5.6720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716599856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 47.292426 kcal Electronic energy + Delta-G solvation = -13885.948935 eV Core-core repulsion = 11692.424152 eV Total energy + Delta-G solvation = -2193.524783 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04091 -37.59682 -35.97659 -33.02331 -29.27323 -28.29203 -27.76576 -24.93485 -23.56018 -21.74836 -21.57067 -19.36652 -18.68897 -17.05445 -16.68875 -16.19558 -15.37216 -15.17415 -14.96652 -14.23589 -13.99456 -13.49520 -13.23790 -13.16478 -12.78815 -12.67954 -12.42480 -12.32216 -12.20048 -12.00498 -11.96509 -11.82325 -11.44138 -10.88208 -10.63031 -10.38127 -10.29633 -8.75766 -7.80671 -5.30129 1.46059 1.47233 1.56124 2.51942 2.81466 3.07611 3.32474 3.72444 3.80534 3.95152 4.06093 4.17012 4.28712 4.48278 4.56515 4.70643 4.74602 4.85072 4.92660 4.97674 5.00968 5.03302 5.05625 5.14968 5.25328 5.32754 5.35818 5.42010 5.49118 5.53515 5.65443 5.72439 6.36075 7.17524 7.89917 8.34372 9.22975 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053143 B = 0.006903 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.755022 B = 4055.236509 C = 4212.120203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.141 4.141 3 H 0.113 0.887 4 C -0.171 4.171 5 C -0.134 4.134 6 H 0.100 0.900 7 C -0.103 4.103 8 H 0.105 0.895 9 C -0.169 4.169 10 C -0.167 4.167 11 H 0.065 0.935 12 C 0.187 3.813 13 N -0.618 5.618 14 C 0.177 3.823 15 C -0.257 4.257 16 H 0.068 0.932 17 C -0.055 4.055 18 N -0.942 5.942 19 Si 0.968 3.032 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.269 1.269 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.003 0.997 33 H 0.015 0.985 34 H 0.030 0.970 35 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 11.380 -9.855 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 H 0.131 0.869 4 C -0.208 4.208 5 C -0.152 4.152 6 H 0.118 0.882 7 C -0.121 4.121 8 H 0.123 0.877 9 C -0.206 4.206 10 C -0.188 4.188 11 H 0.084 0.916 12 C 0.061 3.939 13 N -0.341 5.341 14 C 0.032 3.968 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.250 4.250 18 N -0.589 5.589 19 Si 0.797 3.203 20 H -0.212 1.212 21 H -0.222 1.222 22 H -0.193 1.193 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.021 0.979 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.751 11.281 -9.731 15.637 hybrid contribution 0.212 -1.322 0.386 1.393 sum -4.539 9.959 -9.346 14.392 Atomic orbital electron populations 1.21337 0.92439 1.02066 1.01939 1.22453 0.95883 0.94197 1.03380 0.86906 1.23150 1.02773 1.01618 0.93242 1.21733 1.00229 0.99334 0.93949 0.88197 1.21739 0.99640 0.88561 1.02194 0.87689 1.22993 1.02140 0.98086 0.97334 1.23112 0.97648 1.03354 0.94652 0.91649 1.20465 0.89627 0.91514 0.92290 1.44219 1.75911 1.07722 1.06264 1.20536 0.97821 0.93690 0.84763 1.19513 1.39908 0.84536 0.94744 0.91404 1.25818 1.00967 1.01315 0.96897 1.70232 1.50094 1.32509 1.06064 0.85243 0.77626 0.79682 0.77784 1.21178 1.22172 1.19324 0.92318 0.90997 0.92935 0.88255 0.88902 0.89008 0.89637 0.93717 0.92636 0.97898 0.96645 0.95196 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.95 71.98 0.64 -1.55 16 2 C -0.14 -2.85 6.41 -10.79 -0.07 -2.92 16 3 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.17 -3.74 9.43 30.60 0.29 -3.45 16 5 C -0.13 -3.44 5.32 -10.79 -0.06 -3.50 16 6 H 0.10 2.69 6.85 -2.39 -0.02 2.68 16 7 C -0.10 -3.06 5.24 -10.79 -0.06 -3.12 16 8 H 0.11 2.93 7.29 -2.38 -0.02 2.92 16 9 C -0.17 -5.61 9.43 30.59 0.29 -5.32 16 10 C -0.17 -6.55 6.01 -10.80 -0.06 -6.62 16 11 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 12 C 0.19 7.91 5.07 86.38 0.44 8.35 16 13 N -0.62 -32.46 2.92 -726.94 -2.12 -34.58 16 14 C 0.18 9.19 9.02 127.77 1.15 10.34 16 15 C -0.26 -14.61 9.66 84.04 0.81 -13.80 16 16 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 17 C -0.06 -3.21 5.13 84.86 0.44 -2.77 16 18 N -0.94 -57.56 10.67 21.65 0.23 -57.33 16 19 Si 0.97 46.29 29.57 68.60 2.03 48.32 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H 0.06 1.07 7.88 -2.39 -0.02 1.05 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.01 7.82 -2.38 -0.02 0.99 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.06 7.89 -2.39 -0.02 2.04 16 28 H 0.09 2.99 7.84 -2.38 -0.02 2.97 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 30 H 0.04 1.86 7.76 -2.39 -0.02 1.85 16 31 H 0.06 2.14 6.86 -2.39 -0.02 2.12 16 32 H 0.00 0.15 7.33 -2.39 -0.02 0.14 16 33 H 0.01 0.83 7.35 -2.39 -0.02 0.82 16 34 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 35 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -63.40 283.72 4.98 -58.43 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.03 Total: 9.52 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.81 Total: -24.35 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -1.89 Total: -91.91 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -63.40 4.98 -58.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.719 kcal (2) G-P(sol) polarization free energy of solvation -63.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds