Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 115.56343 * 2 1 4 4 C 1.53077 * 117.51514 * 214.29687 * 2 1 3 5 5 C 1.52995 * 59.98733 * 252.52520 * 4 2 1 6 6 H 1.09003 * 117.49600 * 252.49767 * 5 4 2 7 7 C 1.53000 * 117.50088 * 107.49933 * 5 4 2 8 8 H 1.08996 * 115.55115 * 325.58537 * 7 5 4 9 9 C 1.53075 * 117.51179 * 179.86201 * 7 5 4 10 10 C 1.53000 * 117.49635 * 111.25286 * 7 5 4 11 11 H 1.09000 * 117.50338 * 0.02562 * 10 7 5 12 12 C 1.53002 * 117.50028 * 215.00079 * 10 7 5 13 13 N 1.46497 * 109.47090 * 175.08790 * 12 10 7 14 14 C 1.46501 * 119.99834 * 270.00066 * 13 12 10 15 15 C 1.36938 * 120.00008 * 90.00358 * 13 12 10 16 16 H 1.08006 * 119.99868 * 22.36041 * 15 13 12 17 17 C 1.38805 * 119.99942 * 202.35294 * 15 13 12 18 18 N 1.31618 * 120.00045 * 11.34368 * 17 15 13 19 19 Si 1.86806 * 119.99924 * 191.33875 * 17 15 13 20 20 H 1.48496 * 109.46889 * 90.00435 * 19 17 15 21 21 H 1.48500 * 109.47031 * 210.00029 * 19 17 15 22 22 H 1.48504 * 109.47068 * 330.00215 * 19 17 15 23 23 H 1.09006 * 109.47377 * 274.30593 * 1 2 3 24 24 H 1.08999 * 109.46975 * 34.31038 * 1 2 3 25 25 H 1.09005 * 109.47261 * 154.30962 * 1 2 3 26 26 H 1.09000 * 117.49334 * 145.03218 * 4 2 1 27 27 H 1.09007 * 117.50954 * 0.02562 * 4 2 1 28 28 H 1.08995 * 117.49425 * 145.03982 * 9 7 5 29 29 H 1.08996 * 117.51463 * 359.97438 * 9 7 5 30 30 H 1.09004 * 109.47251 * 295.09208 * 12 10 7 31 31 H 1.09001 * 109.46632 * 55.08919 * 12 10 7 32 32 H 1.08999 * 109.47171 * 94.21411 * 14 13 12 33 33 H 1.09001 * 109.46922 * 214.20703 * 14 13 12 34 34 H 1.08994 * 109.47342 * 334.20377 * 14 13 12 35 35 H 0.97007 * 119.99788 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1713 -0.8752 1.2686 7 6 1.3588 -2.1563 1.4714 8 1 0.4232 -2.4011 0.9685 9 6 1.3603 -2.1581 3.0021 10 6 2.0652 -3.2784 2.2346 11 1 3.1552 -3.2790 2.2338 12 6 1.4044 -4.6584 2.2336 13 7 2.2793 -5.6193 2.9099 14 6 3.2776 -6.3675 2.1420 15 6 2.1639 -5.8181 4.2599 16 1 1.2416 -5.5717 4.7651 17 6 3.2322 -6.3363 4.9788 18 7 4.4197 -6.4279 4.4189 19 14 2.9843 -6.9037 6.7413 20 1 2.6036 -8.3390 6.7503 21 1 4.2466 -6.7217 7.5021 22 1 1.9058 -6.1015 7.3726 23 1 -0.3634 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1723 -0.8756 -1.2680 27 1 1.6123 -1.8592 -1.2687 28 1 0.4257 -2.4041 3.5060 29 1 1.9869 -1.4222 3.5059 30 1 0.4500 -4.6046 2.7575 31 1 1.2370 -4.9803 1.2058 32 1 4.2335 -5.8453 2.1826 33 1 3.3902 -7.3649 2.5671 34 1 2.9519 -6.4493 1.1050 35 1 5.1662 -6.7905 4.9212 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716599857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = 60.821992 kcal Electronic energy + Delta-G solvation = -13755.667143 eV Core-core repulsion = 11562.729046 eV Total energy + Delta-G solvation = -2192.938097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.60901 -36.19091 -34.39830 -30.95183 -28.45155 -26.49313 -25.67591 -23.14565 -21.71432 -21.09894 -19.56729 -18.91099 -16.63436 -15.64145 -15.04706 -14.35736 -13.67015 -13.41161 -13.12584 -13.00713 -12.61353 -12.38585 -11.97073 -11.40019 -11.37018 -10.89776 -10.84178 -10.72824 -10.65955 -10.47023 -10.29956 -10.01044 -9.86528 -9.82980 -9.09781 -8.78487 -8.47089 -6.67834 -5.64649 -3.09871 3.42566 3.48453 3.49994 3.77951 4.53957 4.58210 4.76648 4.92054 5.17048 5.35526 5.47011 5.55124 5.59336 5.61210 5.73431 5.84923 5.89477 5.91923 6.00679 6.11156 6.27890 6.34753 6.43800 6.50495 6.60558 6.69201 6.72651 6.86626 7.17700 7.46384 7.81223 7.88324 8.48411 9.32466 9.95942 10.45134 11.40820 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052243 B = 0.006644 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.826096 B = 4213.523074 C = 4414.062986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.159 4.159 3 H 0.097 0.903 4 C -0.176 4.176 5 C -0.108 4.108 6 H 0.099 0.901 7 C -0.139 4.139 8 H 0.097 0.903 9 C -0.169 4.169 10 C -0.137 4.137 11 H 0.099 0.901 12 C 0.179 3.821 13 N -0.600 5.600 14 C 0.164 3.836 15 C -0.247 4.247 16 H 0.068 0.932 17 C -0.001 4.001 18 N -0.911 5.911 19 Si 0.904 3.096 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.044 0.956 34 H -0.004 1.004 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 9.703 -7.948 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 H 0.115 0.885 4 C -0.213 4.213 5 C -0.126 4.126 6 H 0.117 0.883 7 C -0.157 4.157 8 H 0.115 0.885 9 C -0.206 4.206 10 C -0.158 4.158 11 H 0.117 0.883 12 C 0.051 3.949 13 N -0.323 5.323 14 C 0.020 3.980 15 C -0.377 4.377 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.557 5.557 19 Si 0.734 3.266 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.467 9.598 -7.873 13.565 hybrid contribution 0.194 -0.141 1.054 1.081 sum -5.273 9.457 -6.818 12.796 Atomic orbital electron populations 1.21297 0.93080 1.01320 1.01780 1.22340 0.95384 0.94134 1.05824 0.88469 1.23070 1.02197 1.01292 0.94726 1.21812 0.99718 0.98032 0.93016 0.88294 1.21794 1.00222 1.00219 0.93506 0.88527 1.22911 1.02512 1.02741 0.92464 1.23539 0.99680 0.92047 1.00534 0.88294 1.20464 0.92946 0.86258 0.95186 1.43969 1.40608 1.42617 1.05059 1.20786 0.91562 0.96245 0.89427 1.19220 0.96707 1.38067 0.83669 0.91463 1.25012 0.94936 1.02124 0.97787 1.70072 0.99446 1.49818 1.36369 0.86260 0.76877 0.78668 0.84793 1.21586 1.21815 1.20557 0.92090 0.92895 0.92594 0.89283 0.88879 0.89455 0.89963 0.93815 0.94171 0.95485 0.93760 0.98566 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.04 37.15 0.34 -0.92 16 2 C -0.16 -1.87 6.41 -90.58 -0.58 -2.45 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.18 -2.17 9.90 -26.69 -0.26 -2.43 16 5 C -0.11 -1.52 5.85 -90.62 -0.53 -2.05 16 6 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.14 -2.17 4.90 -90.58 -0.44 -2.62 16 8 H 0.10 1.44 7.19 -51.93 -0.37 1.06 16 9 C -0.17 -2.93 9.90 -26.69 -0.26 -3.19 16 10 C -0.14 -2.68 5.73 -90.62 -0.52 -3.20 16 11 H 0.10 2.21 8.14 -51.93 -0.42 1.78 16 12 C 0.18 3.82 5.99 -4.04 -0.02 3.80 16 13 N -0.60 -15.61 2.93 -181.12 -0.53 -16.14 16 14 C 0.16 4.20 9.01 59.85 0.54 4.74 16 15 C -0.25 -6.96 9.67 -15.06 -0.15 -7.10 16 16 H 0.07 1.86 7.84 -52.48 -0.41 1.45 16 17 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 18 N -0.91 -27.18 10.59 55.49 0.59 -26.59 16 19 Si 0.90 22.33 29.57 -169.99 -5.03 17.30 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.60 7.40 -51.93 -0.38 0.21 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.13 8.05 -51.92 -0.42 0.72 16 28 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.91 7.77 -51.93 -0.40 0.51 16 31 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 32 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 33 H 0.04 1.21 7.19 -51.93 -0.37 0.83 16 34 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -29.57 287.84 -8.69 -38.26 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.08 Total: -1.63 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.99 Total: -15.54 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.06 Total: -42.73 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.57 -8.69 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.084 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds