Wall clock time and date at job start Mon Mar 30 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 115.56111 * 2 1 4 4 C 1.52999 * 117.49567 * 214.31134 * 2 1 3 5 5 C 1.53002 * 117.49514 * 145.68882 * 2 1 3 6 6 H 1.09002 * 117.51621 * 214.96987 * 5 2 1 7 7 C 1.52994 * 117.50120 * 0.02562 * 5 2 1 8 8 H 1.09001 * 115.55197 * 85.72966 * 7 5 2 9 9 C 1.52995 * 117.50052 * 231.40831 * 7 5 2 10 10 C 1.52993 * 60.00196 * 107.48807 * 9 7 5 11 11 H 1.08998 * 117.50077 * 252.50915 * 10 9 7 12 12 C 1.53001 * 117.49931 * 107.49248 * 10 9 7 13 13 N 1.46501 * 109.47393 * 116.37388 * 12 10 9 14 14 C 1.46493 * 120.00108 * 269.99949 * 13 12 10 15 15 C 1.36943 * 119.99565 * 89.99818 * 13 12 10 16 16 H 1.07996 * 120.00231 * 22.33614 * 15 13 12 17 17 C 1.38809 * 119.99839 * 202.32816 * 15 13 12 18 18 N 1.31619 * 119.99943 * 11.33741 * 17 15 13 19 19 Si 1.86795 * 120.00056 * 191.32759 * 17 15 13 20 20 H 1.48507 * 109.46849 * 90.00655 * 19 17 15 21 21 H 1.48500 * 109.47424 * 210.00042 * 19 17 15 22 22 H 1.48496 * 109.47444 * 330.00881 * 19 17 15 23 23 H 1.09002 * 109.46957 * 154.29373 * 1 2 3 24 24 H 1.08996 * 109.47102 * 274.29734 * 1 2 3 25 25 H 1.09003 * 109.47030 * 34.29741 * 1 2 3 26 26 H 1.09007 * 117.49649 * 145.02759 * 4 2 1 27 27 H 1.08992 * 117.50118 * 0.02562 * 4 2 1 28 28 H 1.09003 * 117.50111 * 214.98238 * 9 7 5 29 29 H 1.09002 * 117.49727 * 359.96842 * 9 7 5 30 30 H 1.09001 * 109.46956 * 236.37633 * 12 10 9 31 31 H 1.09006 * 109.47155 * 356.37479 * 12 10 9 32 32 H 1.09003 * 109.46872 * 94.24329 * 14 13 12 33 33 H 1.09007 * 109.47159 * 214.23583 * 14 13 12 34 34 H 1.08995 * 109.47378 * 334.24147 * 14 13 12 35 35 H 0.96999 * 120.00169 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1716 -0.8756 1.2683 7 6 1.3588 -2.1565 1.4709 8 1 1.0295 -2.9926 0.8540 9 6 1.6465 -2.4379 2.9470 10 6 0.3968 -1.6508 2.5478 11 1 0.3891 -0.5804 2.7534 12 6 -0.9542 -2.3573 2.6765 13 7 -1.7762 -1.6622 3.6702 14 6 -1.7120 -2.0571 5.0795 15 6 -2.6045 -0.6433 3.2816 16 1 -2.9351 -0.5776 2.2556 17 6 -3.0193 0.3050 4.2066 18 7 -2.4497 0.3614 5.3918 19 14 -4.3856 1.5012 3.7691 20 1 -5.6963 0.9171 4.1518 21 1 -4.1798 2.7770 4.5007 22 1 -4.3673 1.7604 2.3070 23 1 -0.3633 -0.9260 -0.4458 24 1 -0.3633 0.0770 1.0247 25 1 -0.3633 0.8490 -0.5791 26 1 3.1716 -0.8752 -1.2683 27 1 1.6112 -1.8582 -1.2686 28 1 1.5063 -3.4591 3.3014 29 1 2.4614 -1.8857 3.4151 30 1 -1.4630 -2.3468 1.7126 31 1 -0.7963 -3.3885 2.9928 32 1 -0.9907 -1.4276 5.6007 33 1 -2.6948 -1.9375 5.5355 34 1 -1.4026 -3.0998 5.1509 35 1 -2.7393 1.0243 6.0380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716599858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:02 Heat of formation + Delta-G solvation = 48.481711 kcal Electronic energy + Delta-G solvation = -14142.296761 eV Core-core repulsion = 11948.823550 eV Total energy + Delta-G solvation = -2193.473211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97775 -37.61220 -35.98437 -33.00418 -29.58618 -28.20210 -27.68967 -24.38607 -23.44560 -22.17469 -21.32316 -19.98684 -18.66787 -16.89316 -16.61333 -15.90576 -15.45834 -15.38485 -14.68743 -14.26920 -13.77332 -13.70811 -13.34881 -13.01422 -12.81308 -12.56065 -12.40191 -12.26431 -12.18469 -12.02824 -11.94606 -11.91633 -11.38007 -11.18328 -10.62066 -10.35592 -10.11561 -8.74980 -7.79576 -5.26641 1.46031 1.46802 1.55536 2.51890 2.77284 3.15446 3.33781 3.64911 3.83986 3.95811 4.09754 4.21046 4.34151 4.49626 4.51387 4.64412 4.69086 4.87490 4.95003 4.98403 5.01933 5.03474 5.07435 5.16106 5.30583 5.34686 5.36576 5.38783 5.53056 5.59492 5.69615 5.75451 6.37147 7.18990 7.91975 8.35715 9.24391 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.009522 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.583777 B = 2939.989939 C = 3523.938190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.160 4.160 3 H 0.102 0.898 4 C -0.153 4.153 5 C -0.132 4.132 6 H 0.104 0.896 7 C -0.107 4.107 8 H 0.110 0.890 9 C -0.173 4.173 10 C -0.154 4.154 11 H 0.066 0.934 12 C 0.180 3.820 13 N -0.616 5.616 14 C 0.181 3.819 15 C -0.252 4.252 16 H 0.070 0.930 17 C -0.056 4.056 18 N -0.941 5.941 19 Si 0.964 3.036 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.268 1.268 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.000 1.000 33 H 0.016 0.984 34 H 0.027 0.973 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 -4.441 -9.905 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 H 0.120 0.880 4 C -0.190 4.190 5 C -0.150 4.150 6 H 0.122 0.878 7 C -0.126 4.126 8 H 0.128 0.872 9 C -0.209 4.209 10 C -0.175 4.175 11 H 0.084 0.916 12 C 0.054 3.946 13 N -0.339 5.339 14 C 0.036 3.964 15 C -0.382 4.382 16 H 0.088 0.912 17 C -0.251 4.251 18 N -0.588 5.588 19 Si 0.793 3.207 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.193 1.193 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.211 -4.359 -9.779 13.492 hybrid contribution -0.706 1.046 0.425 1.332 sum 7.505 -3.312 -9.354 12.442 Atomic orbital electron populations 1.21319 0.93447 1.01381 1.01488 1.22357 0.95147 0.94639 1.05698 0.87996 1.23172 1.02589 1.00565 0.92637 1.21854 0.99696 0.99157 0.94266 0.87834 1.21768 1.00722 0.99749 0.90344 0.87174 1.23116 0.99425 1.01128 0.97273 1.23066 0.92572 0.98460 1.03410 0.91599 1.20561 0.88396 0.93584 0.92066 1.44190 1.46973 1.38633 1.04109 1.20501 0.98208 0.93356 0.84378 1.19506 1.20386 1.02586 0.95713 0.91221 1.25760 1.02437 0.99684 0.97205 1.70245 1.43779 1.37399 1.07412 0.85301 0.79394 0.78166 0.77863 1.21307 1.22353 1.19253 0.92570 0.93658 0.92505 0.87240 0.88336 0.88245 0.89673 0.93517 0.92682 0.98170 0.96503 0.95416 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 8.97 71.98 0.65 -3.06 16 2 C -0.16 -4.33 6.39 -10.79 -0.07 -4.39 16 3 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 4 C -0.15 -3.31 9.90 30.60 0.30 -3.01 16 5 C -0.13 -3.49 5.87 -10.79 -0.06 -3.55 16 6 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 7 C -0.11 -3.13 4.97 -10.80 -0.05 -3.19 16 8 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 9 C -0.17 -5.37 9.90 30.59 0.30 -5.07 16 10 C -0.15 -5.84 4.02 -10.80 -0.04 -5.89 16 11 H 0.07 3.08 7.29 -2.39 -0.02 3.06 16 12 C 0.18 7.41 5.99 86.38 0.52 7.93 16 13 N -0.62 -31.73 2.93 -726.94 -2.13 -33.86 16 14 C 0.18 9.28 9.01 127.77 1.15 10.43 16 15 C -0.25 -14.06 9.67 84.03 0.81 -13.25 16 16 H 0.07 3.79 7.84 -2.91 -0.02 3.77 16 17 C -0.06 -3.23 5.13 84.86 0.44 -2.80 16 18 N -0.94 -57.11 10.58 21.65 0.23 -56.88 16 19 Si 0.96 46.08 29.57 68.60 2.03 48.11 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H 0.06 1.65 7.90 -2.39 -0.02 1.63 16 24 H 0.04 1.75 5.95 -2.39 -0.01 1.74 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 28 H 0.10 2.82 8.03 -2.39 -0.02 2.80 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 31 H 0.05 2.04 7.60 -2.38 -0.02 2.02 16 32 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 33 H 0.02 0.91 7.19 -2.38 -0.02 0.89 16 34 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -62.47 284.53 5.10 -57.37 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.03 Total: 11.09 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.94 Total: -25.84 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -1.90 Total: -90.74 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -62.47 5.10 -57.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.855 kcal (2) G-P(sol) polarization free energy of solvation -62.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds