Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53005 * 117.49874 * 214.32964 * 2 1 3 5 5 C 1.52999 * 59.99973 * 252.48565 * 4 2 1 6 6 H 1.09001 * 117.50150 * 252.51259 * 5 4 2 7 7 C 1.53003 * 117.49799 * 107.48940 * 5 4 2 8 8 H 1.09005 * 115.54811 * 325.66091 * 7 5 4 9 9 C 1.52999 * 117.49797 * 179.97438 * 7 5 4 10 10 C 1.53001 * 60.00042 * 252.50941 * 9 7 5 11 11 H 1.08992 * 117.50426 * 252.50938 * 10 9 7 12 12 C 1.53005 * 117.49623 * 107.48550 * 10 9 7 13 13 N 1.46906 * 109.46708 * 116.37646 * 12 10 9 14 14 C 1.46898 * 110.99720 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47077 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99996 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00128 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99843 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99829 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47441 * 90.00199 * 19 17 15 21 21 H 1.48500 * 109.46977 * 210.00130 * 19 17 15 22 22 H 1.48503 * 109.47212 * 329.99633 * 19 17 15 23 23 H 1.09004 * 109.46919 * 154.42192 * 1 2 3 24 24 H 1.09001 * 109.47034 * 274.41599 * 1 2 3 25 25 H 1.08995 * 109.47274 * 34.41368 * 1 2 3 26 26 H 1.09004 * 117.49602 * 359.97438 * 4 2 1 27 27 H 1.09004 * 117.49357 * 144.97247 * 4 2 1 28 28 H 1.08994 * 117.50063 * 0.02562 * 9 7 5 29 29 H 1.08999 * 117.49522 * 145.02534 * 9 7 5 30 30 H 1.08994 * 109.47240 * 236.38204 * 12 10 9 31 31 H 1.08999 * 109.47270 * 356.38692 * 12 10 9 32 32 H 1.00897 * 111.00325 * 303.95646 * 13 12 10 33 33 H 1.09000 * 109.47718 * 300.00653 * 14 13 12 34 34 H 1.09007 * 109.46865 * 60.00468 * 14 13 12 35 35 H 0.97007 * 119.99823 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1208 -0.7654 5 6 2.2370 -1.1210 0.7646 6 1 3.1721 -0.8750 1.2677 7 6 1.3598 -2.1564 1.4712 8 1 0.4244 -2.4019 0.9682 9 6 1.3607 -2.1570 3.0012 10 6 2.0667 -3.2777 2.2353 11 1 1.5965 -4.2610 2.2352 12 6 3.5967 -3.2776 2.2343 13 7 4.0868 -4.4856 2.9117 14 6 5.5553 -4.5200 2.9294 15 6 6.0200 -5.7707 3.6301 16 1 5.2968 -6.4702 4.0225 17 6 7.3685 -6.0219 3.7701 18 7 7.7740 -7.1131 4.3820 19 14 8.6194 -4.8116 3.0919 20 1 8.9515 -3.8070 4.1337 21 1 9.8510 -5.5415 2.6976 22 1 8.0501 -4.1243 1.9050 23 1 -0.3633 -0.9270 -0.4437 24 1 -0.3633 0.0791 1.0246 25 1 -0.3633 0.8478 -0.5808 26 1 1.6112 -1.8583 -1.2686 27 1 3.1712 -0.8745 -1.2693 28 1 1.9859 -1.4195 3.5044 29 1 0.4259 -2.4031 3.5049 30 1 3.9594 -3.2648 1.2066 31 1 3.9604 -2.3942 2.7590 32 1 3.7119 -4.5536 3.8460 33 1 5.9313 -4.5160 1.9064 34 1 5.9328 -3.6450 3.4587 35 1 8.7227 -7.2900 4.4802 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716606386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 36.179559 kcal Electronic energy + Delta-G solvation = -13362.667003 eV Core-core repulsion = 11168.660331 eV Total energy + Delta-G solvation = -2194.006673 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08136 -36.38437 -34.44992 -32.19479 -28.63430 -28.11483 -24.53287 -23.63233 -21.62290 -21.05682 -20.51157 -18.56713 -16.74429 -16.15867 -15.42962 -14.54517 -14.27243 -13.85423 -13.35471 -13.24442 -12.94783 -12.57201 -12.50857 -12.00003 -11.87279 -11.56125 -11.27082 -11.10370 -10.87506 -10.70133 -10.30277 -10.18579 -9.79962 -9.57547 -9.30120 -9.16408 -8.58400 -7.44402 -6.04473 -4.02166 3.29280 3.36685 3.39942 3.48287 4.15975 4.43378 4.48453 4.67407 4.84072 4.87426 5.14705 5.25105 5.27903 5.30142 5.31961 5.56068 5.66303 5.69009 5.74937 5.77484 5.89357 5.91911 6.03569 6.13993 6.18632 6.24829 6.32391 6.53441 6.81111 7.03857 7.63717 7.93504 8.38671 8.67733 9.03846 9.57686 11.08921 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051010 B = 0.005704 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.779829 B = 4907.908822 C = 5280.930234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 H 0.100 0.900 4 C -0.173 4.173 5 C -0.115 4.115 6 H 0.104 0.896 7 C -0.120 4.120 8 H 0.102 0.898 9 C -0.178 4.178 10 C -0.134 4.134 11 H 0.112 0.888 12 C 0.089 3.911 13 N -0.680 5.680 14 C 0.164 3.836 15 C -0.516 4.516 16 H 0.079 0.921 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.267 1.267 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.335 0.665 33 H 0.026 0.974 34 H -0.022 1.022 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 14.104 -7.497 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 H 0.118 0.882 4 C -0.210 4.210 5 C -0.133 4.133 6 H 0.122 0.878 7 C -0.139 4.139 8 H 0.120 0.880 9 C -0.215 4.215 10 C -0.152 4.152 11 H 0.130 0.870 12 C -0.040 4.040 13 N -0.310 5.310 14 C 0.036 3.964 15 C -0.554 4.554 16 H 0.097 0.903 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.192 1.192 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.152 0.848 33 H 0.044 0.956 34 H -0.004 1.004 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.761 13.604 -8.009 20.299 hybrid contribution 1.048 1.254 0.359 1.673 sum -11.712 14.857 -7.650 20.407 Atomic orbital electron populations 1.21315 0.93022 1.01501 1.01753 1.22348 0.95374 0.94285 1.05421 0.88209 1.23082 1.02438 1.01204 0.94256 1.21795 0.99916 0.98188 0.93435 0.87837 1.21737 0.99813 0.98980 0.93337 0.88031 1.23095 1.02616 1.02277 0.93482 1.22480 0.95423 0.94294 1.03010 0.86997 1.21468 0.91171 0.91932 0.99469 1.60463 1.10779 1.36284 1.23457 1.20000 0.83643 0.96168 0.96587 1.21080 0.92751 1.05452 1.36101 0.90275 1.24909 0.98308 0.95273 0.94866 1.69904 1.15427 1.25605 1.43057 0.86813 0.81188 0.81504 0.79936 1.20363 1.21119 1.19190 0.92604 0.92142 0.92654 0.88756 0.88962 0.89077 0.89061 0.91368 0.96426 0.84755 0.95617 1.00425 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.05 37.16 0.34 -0.69 16 2 C -0.16 -1.54 6.41 -90.62 -0.58 -2.12 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.17 -1.84 9.90 -26.73 -0.26 -2.10 16 5 C -0.12 -1.34 5.10 -90.62 -0.46 -1.81 16 6 H 0.10 1.30 7.35 -51.93 -0.38 0.92 16 7 C -0.12 -1.44 5.18 -90.62 -0.47 -1.91 16 8 H 0.10 1.12 7.19 -51.93 -0.37 0.75 16 9 C -0.18 -2.16 9.90 -26.73 -0.26 -2.43 16 10 C -0.13 -1.91 5.95 -90.62 -0.54 -2.45 16 11 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 12 C 0.09 1.56 4.77 -3.82 -0.02 1.54 16 13 N -0.68 -14.55 6.49 -115.05 -0.75 -15.30 16 14 C 0.16 4.11 4.51 -4.98 -0.02 4.09 16 15 C -0.52 -15.10 9.87 -34.44 -0.34 -15.44 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 19 Si 0.88 21.95 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 H 0.05 0.47 7.40 -51.93 -0.38 0.09 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.97 8.05 -51.93 -0.42 0.56 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.12 8.03 -51.93 -0.42 0.71 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 31 H 0.02 0.30 7.62 -51.93 -0.40 -0.09 16 32 H 0.34 6.95 8.72 -39.29 -0.34 6.61 16 33 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 34 H -0.02 -0.54 7.57 -51.92 -0.39 -0.94 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -30.45 287.14 -9.06 -39.51 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.02 Total: 2.89 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.72 Total: -21.41 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.03 Total: -42.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.45 -9.06 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.686 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds