Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53005 * 117.49874 * 214.32964 * 2 1 3 5 5 C 1.52999 * 59.99973 * 252.48565 * 4 2 1 6 6 H 1.09001 * 117.50150 * 252.51259 * 5 4 2 7 7 C 1.53003 * 117.49799 * 107.48940 * 5 4 2 8 8 H 1.09005 * 115.54811 * 325.66091 * 7 5 4 9 9 C 1.52999 * 117.49797 * 179.97438 * 7 5 4 10 10 C 1.53001 * 60.00042 * 252.50941 * 9 7 5 11 11 H 1.08992 * 117.50426 * 252.50938 * 10 9 7 12 12 C 1.53005 * 117.49623 * 107.48550 * 10 9 7 13 13 N 1.46906 * 109.46708 * 116.37646 * 12 10 9 14 14 C 1.46898 * 110.99720 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47077 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99996 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00128 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99843 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99829 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47441 * 90.00199 * 19 17 15 21 21 H 1.48500 * 109.46977 * 210.00130 * 19 17 15 22 22 H 1.48503 * 109.47212 * 329.99633 * 19 17 15 23 23 H 1.09004 * 109.46919 * 154.42192 * 1 2 3 24 24 H 1.09001 * 109.47034 * 274.41599 * 1 2 3 25 25 H 1.08995 * 109.47274 * 34.41368 * 1 2 3 26 26 H 1.09004 * 117.49602 * 359.97438 * 4 2 1 27 27 H 1.09004 * 117.49357 * 144.97247 * 4 2 1 28 28 H 1.08994 * 117.50063 * 0.02562 * 9 7 5 29 29 H 1.08999 * 117.49522 * 145.02534 * 9 7 5 30 30 H 1.08994 * 109.47240 * 236.38204 * 12 10 9 31 31 H 1.08999 * 109.47270 * 356.38692 * 12 10 9 32 32 H 1.00897 * 111.00325 * 303.95646 * 13 12 10 33 33 H 1.09000 * 109.47718 * 300.00653 * 14 13 12 34 34 H 1.09007 * 109.46865 * 60.00468 * 14 13 12 35 35 H 0.97007 * 119.99823 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1208 -0.7654 5 6 2.2370 -1.1210 0.7646 6 1 3.1721 -0.8750 1.2677 7 6 1.3598 -2.1564 1.4712 8 1 0.4244 -2.4019 0.9682 9 6 1.3607 -2.1570 3.0012 10 6 2.0667 -3.2777 2.2353 11 1 1.5965 -4.2610 2.2352 12 6 3.5967 -3.2776 2.2343 13 7 4.0868 -4.4856 2.9117 14 6 5.5553 -4.5200 2.9294 15 6 6.0200 -5.7707 3.6301 16 1 5.2968 -6.4702 4.0225 17 6 7.3685 -6.0219 3.7701 18 7 7.7740 -7.1131 4.3820 19 14 8.6194 -4.8116 3.0919 20 1 8.9515 -3.8070 4.1337 21 1 9.8510 -5.5415 2.6976 22 1 8.0501 -4.1243 1.9050 23 1 -0.3633 -0.9270 -0.4437 24 1 -0.3633 0.0791 1.0246 25 1 -0.3633 0.8478 -0.5808 26 1 1.6112 -1.8583 -1.2686 27 1 3.1712 -0.8745 -1.2693 28 1 1.9859 -1.4195 3.5044 29 1 0.4259 -2.4031 3.5049 30 1 3.9594 -3.2648 1.2066 31 1 3.9604 -2.3942 2.7590 32 1 3.7119 -4.5536 3.8460 33 1 5.9313 -4.5160 1.9064 34 1 5.9328 -3.6450 3.4587 35 1 8.7227 -7.2900 4.4802 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716606386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 17.337456 kcal Electronic energy + Delta-G solvation = -13363.484058 eV Core-core repulsion = 11168.660331 eV Total energy + Delta-G solvation = -2194.823728 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05100 -37.58452 -36.03122 -34.31604 -30.02612 -29.33360 -26.21614 -24.55590 -23.07460 -22.52317 -21.51212 -19.67432 -18.81766 -17.14784 -16.88582 -16.21996 -15.70833 -15.32107 -14.79335 -14.50474 -14.09644 -13.95532 -13.62267 -13.48490 -13.27546 -12.79278 -12.63971 -12.33299 -12.12241 -11.96387 -11.81094 -11.71448 -11.46488 -11.10845 -10.84019 -10.54134 -10.14852 -9.17534 -8.32216 -6.37095 1.32737 1.35179 1.46666 2.32436 2.56900 3.01456 3.22882 3.42703 3.58557 3.89694 3.96657 4.14200 4.33370 4.36934 4.38942 4.49833 4.52991 4.70698 4.72559 4.90396 4.93428 4.96509 4.99092 5.02499 5.05394 5.23627 5.25649 5.34450 5.39828 5.48578 5.50390 5.94867 6.54746 6.64162 6.74890 7.28090 8.84634 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051010 B = 0.005704 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.779829 B = 4907.908822 C = 5280.930234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.176 4.176 5 C -0.135 4.135 6 H 0.091 0.909 7 C -0.101 4.101 8 H 0.115 0.885 9 C -0.167 4.167 10 C -0.155 4.155 11 H 0.104 0.896 12 C 0.096 3.904 13 N -0.689 5.689 14 C 0.175 3.825 15 C -0.531 4.531 16 H 0.037 0.963 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.253 1.253 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.337 0.663 33 H 0.023 0.977 34 H -0.016 1.016 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 16.389 -8.578 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.213 4.213 5 C -0.154 4.154 6 H 0.109 0.891 7 C -0.119 4.119 8 H 0.133 0.867 9 C -0.203 4.203 10 C -0.174 4.174 11 H 0.122 0.878 12 C -0.033 4.033 13 N -0.320 5.320 14 C 0.046 3.954 15 C -0.569 4.569 16 H 0.056 0.944 17 C -0.189 4.189 18 N -0.587 5.587 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.176 1.176 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.154 0.846 33 H 0.041 0.959 34 H 0.002 0.998 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.315 15.899 -9.094 22.644 hybrid contribution 1.136 0.493 0.718 1.431 sum -12.179 16.391 -8.376 22.072 Atomic orbital electron populations 1.21349 0.91898 1.02227 1.02168 1.22446 0.96202 0.94028 1.03337 0.87442 1.23151 1.02875 1.01831 0.93461 1.21792 0.99971 0.99555 0.94044 0.89081 1.21777 0.99594 0.97149 0.93403 0.86673 1.23162 1.02719 1.00533 0.93932 1.22283 0.93379 0.95103 1.06595 0.87758 1.21439 0.93325 0.90140 0.98382 1.60366 1.08705 1.39001 1.23886 1.19746 0.85938 0.94124 0.95588 1.21346 0.92537 1.06472 1.36592 0.94424 1.25889 1.00679 0.97326 0.94999 1.70052 1.16301 1.27831 1.44480 0.85641 0.78044 0.78956 0.79831 1.18985 1.20322 1.17644 0.92467 0.91958 0.91323 0.88465 0.88778 0.89171 0.87388 0.92032 0.96021 0.84567 0.95873 0.99807 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.05 71.98 0.65 -1.05 16 2 C -0.14 -2.45 6.41 -10.79 -0.07 -2.52 16 3 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.18 -3.40 9.90 30.60 0.30 -3.10 16 5 C -0.14 -2.91 5.10 -10.79 -0.06 -2.96 16 6 H 0.09 2.18 7.35 -2.39 -0.02 2.16 16 7 C -0.10 -2.20 5.18 -10.79 -0.06 -2.26 16 8 H 0.12 2.23 7.19 -2.38 -0.02 2.22 16 9 C -0.17 -3.71 9.90 30.59 0.30 -3.41 16 10 C -0.16 -4.27 5.95 -10.79 -0.06 -4.34 16 11 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 12 C 0.10 3.28 4.77 86.30 0.41 3.69 16 13 N -0.69 -29.60 6.49 -517.91 -3.36 -32.97 16 14 C 0.17 8.72 4.51 85.56 0.39 9.11 16 15 C -0.53 -31.82 9.87 25.60 0.25 -31.57 16 16 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 17 C 0.01 0.52 5.47 84.66 0.46 0.98 16 18 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 19 Si 0.95 44.90 27.47 68.60 1.88 46.79 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 23 H 0.06 0.80 7.40 -2.39 -0.02 0.79 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 1.81 8.05 -2.39 -0.02 1.79 16 27 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.09 2.05 8.03 -2.39 -0.02 2.03 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 2.16 8.02 -2.39 -0.02 2.14 16 31 H 0.02 0.72 7.62 -2.39 -0.02 0.71 16 32 H 0.34 14.17 8.72 -89.70 -0.78 13.38 16 33 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 34 H -0.02 -0.76 7.57 -2.38 -0.02 -0.78 16 35 H 0.27 15.79 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -65.52 287.14 1.56 -63.96 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.21 Total: 19.42 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 2.53 Total: -37.41 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.06 Total: -92.75 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Total: -65.52 1.56 -63.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.297 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds