Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 115.55333 * 2 1 4 4 C 1.53004 * 117.51460 * 214.29981 * 2 1 3 5 5 C 1.52999 * 117.49845 * 145.67254 * 2 1 3 6 6 H 1.08997 * 117.49753 * 215.02685 * 5 2 1 7 7 C 1.53004 * 117.49749 * 0.02562 * 5 2 1 8 8 H 1.08998 * 115.54963 * 330.04523 * 7 5 2 9 9 C 1.52996 * 117.49923 * 115.75740 * 7 5 2 10 10 C 1.52997 * 60.00139 * 107.48749 * 9 7 5 11 11 H 1.09009 * 117.52085 * 107.48132 * 10 9 7 12 12 C 1.53003 * 117.50012 * 252.50708 * 10 9 7 13 13 N 1.46899 * 109.47021 * 244.86141 * 12 10 9 14 14 C 1.46908 * 110.99366 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46593 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99999 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99651 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00238 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47481 * 119.99495 * 19 17 15 22 22 H 1.48503 * 109.47078 * 239.99634 * 19 17 15 23 23 H 1.09001 * 109.46670 * 279.43599 * 1 2 3 24 24 H 1.09001 * 109.47106 * 39.43165 * 1 2 3 25 25 H 1.09001 * 109.47429 * 159.43422 * 1 2 3 26 26 H 1.09001 * 117.50072 * 145.03259 * 4 2 1 27 27 H 1.08997 * 117.49920 * 0.02562 * 4 2 1 28 28 H 1.08996 * 117.50220 * 359.97438 * 9 7 5 29 29 H 1.09007 * 117.49879 * 214.97501 * 9 7 5 30 30 H 1.09000 * 109.46791 * 4.86392 * 12 10 9 31 31 H 1.08995 * 109.46756 * 124.85785 * 12 10 9 32 32 H 1.00899 * 111.00232 * 303.94912 * 13 12 10 33 33 H 1.08993 * 109.47128 * 299.99785 * 14 13 12 34 34 H 1.09000 * 109.46886 * 60.00129 * 14 13 12 35 35 H 0.97001 * 119.99722 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1711 -0.8746 1.2692 7 6 1.3588 -2.1561 1.4716 8 1 0.3910 -1.7938 1.8183 9 6 1.4371 -3.6025 0.9790 10 6 2.0619 -3.2166 2.3212 11 1 1.5567 -3.5520 3.2270 12 6 3.5889 -3.1606 2.3996 13 7 4.0699 -4.1946 3.3256 14 6 5.5353 -4.1710 3.4257 15 6 5.9907 -5.2433 4.3817 16 1 5.2642 -5.8785 4.8666 17 6 7.3348 -5.4129 4.6380 18 7 8.2195 -4.6390 4.0479 19 14 7.8993 -6.7415 5.8234 20 1 6.7171 -7.4695 6.3505 21 1 8.7906 -7.6931 5.1126 22 1 8.6389 -6.1180 6.9501 23 1 -0.3633 0.1685 1.0138 24 1 -0.3633 0.7938 -0.6527 25 1 -0.3634 -0.9622 -0.3610 26 1 3.1721 -0.8751 -1.2677 27 1 1.6119 -1.8585 -1.2683 28 1 2.1135 -3.8165 0.1516 29 1 0.5206 -4.1922 1.0015 30 1 4.0101 -3.3351 1.4095 31 1 3.8985 -2.1791 2.7583 32 1 3.6433 -4.0930 4.2343 33 1 5.9697 -4.3528 2.4428 34 1 5.8588 -3.1965 3.7914 35 1 9.1651 -4.7585 4.2279 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716606390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = 14.813766 kcal Electronic energy + Delta-G solvation = -13324.246854 eV Core-core repulsion = 11129.313691 eV Total energy + Delta-G solvation = -2194.933163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12448 -37.49317 -35.95723 -34.23669 -29.53437 -29.29461 -26.24266 -24.99343 -23.42306 -21.92507 -21.78593 -19.53362 -18.45342 -16.99127 -16.67619 -16.47685 -16.19420 -15.17040 -14.69819 -14.60179 -14.05769 -13.70662 -13.44975 -13.34937 -13.14426 -12.72268 -12.66460 -12.36300 -12.21616 -12.04793 -11.90539 -11.57121 -11.24342 -11.10542 -10.68574 -10.46969 -10.39397 -9.12109 -8.24341 -6.36211 1.40876 1.41907 1.56192 2.39357 2.70924 2.97688 3.08886 3.54630 3.72501 3.88576 3.94291 4.09687 4.19403 4.41937 4.48357 4.52055 4.63293 4.77020 4.80426 4.92750 4.98569 4.99517 5.01535 5.06882 5.21914 5.23450 5.28990 5.34228 5.38214 5.48416 5.60394 5.99745 6.42863 6.70808 6.87376 7.35140 8.87850 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.069140 B = 0.005027 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.876380 B = 5568.668391 C = 5791.304892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.141 4.141 3 H 0.105 0.895 4 C -0.174 4.174 5 C -0.142 4.142 6 H 0.086 0.914 7 C -0.104 4.104 8 H 0.122 0.878 9 C -0.161 4.161 10 C -0.151 4.151 11 H 0.108 0.892 12 C 0.098 3.902 13 N -0.687 5.687 14 C 0.207 3.793 15 C -0.537 4.537 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.014 0.986 32 H 0.335 0.665 33 H -0.003 1.003 34 H -0.041 1.041 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 7.292 -6.854 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 H 0.123 0.877 4 C -0.211 4.211 5 C -0.160 4.160 6 H 0.104 0.896 7 C -0.123 4.123 8 H 0.140 0.860 9 C -0.197 4.197 10 C -0.169 4.169 11 H 0.127 0.873 12 C -0.031 4.031 13 N -0.317 5.317 14 C 0.079 3.921 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.153 0.847 33 H 0.015 0.985 34 H -0.023 1.023 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.193 6.827 -7.356 18.208 hybrid contribution 1.150 0.318 0.969 1.537 sum -14.043 7.145 -6.387 17.002 Atomic orbital electron populations 1.21339 0.91631 1.02398 1.02211 1.22460 0.96377 0.93920 1.03177 0.87672 1.23157 1.02646 1.01991 0.93283 1.21776 1.00132 1.00026 0.94037 0.89601 1.21809 0.99610 0.88998 1.01853 0.86034 1.23109 1.02787 0.97237 0.96616 1.22235 0.93233 1.04958 0.96477 0.87348 1.21361 0.93662 0.91766 0.96337 1.60528 1.07555 1.49173 1.14487 1.19213 0.83910 0.93845 0.95109 1.21585 0.92611 1.17466 1.25824 0.91584 1.26014 0.96680 0.98926 0.98232 1.70111 1.02021 1.40693 1.44770 0.85218 0.78350 0.78257 0.78061 1.18528 1.20287 1.20160 0.91850 0.91199 0.92246 0.89183 0.88096 0.89620 0.87325 0.93092 0.96815 0.84738 0.98494 1.02326 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.91 71.98 0.64 -1.17 16 2 C -0.14 -2.70 6.41 -10.79 -0.07 -2.77 16 3 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.17 -3.68 9.52 30.60 0.29 -3.39 16 5 C -0.14 -3.41 5.35 -10.79 -0.06 -3.47 16 6 H 0.09 2.43 6.92 -2.39 -0.02 2.41 16 7 C -0.10 -2.45 5.27 -10.79 -0.06 -2.51 16 8 H 0.12 2.42 7.19 -2.39 -0.02 2.41 16 9 C -0.16 -3.99 9.52 30.59 0.29 -3.69 16 10 C -0.15 -4.42 5.95 -10.79 -0.06 -4.48 16 11 H 0.11 3.06 8.13 -2.38 -0.02 3.04 16 12 C 0.10 3.74 4.87 86.30 0.42 4.16 16 13 N -0.69 -31.34 6.49 -517.93 -3.36 -34.70 16 14 C 0.21 11.67 5.44 85.56 0.47 12.13 16 15 C -0.54 -31.62 9.32 25.60 0.24 -31.38 16 16 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 19 Si 0.98 44.98 29.54 68.60 2.03 47.01 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H 0.06 0.92 7.88 -2.39 -0.02 0.90 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.90 7.82 -2.39 -0.02 0.88 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.10 2.00 7.98 -2.39 -0.02 1.98 16 28 H 0.09 2.28 7.93 -2.39 -0.02 2.26 16 29 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.05 2.05 7.88 -2.39 -0.02 2.03 16 31 H 0.01 0.54 7.42 -2.39 -0.02 0.52 16 32 H 0.34 14.36 8.72 -89.69 -0.78 13.58 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H -0.04 -2.47 8.14 -2.39 -0.02 -2.48 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -64.77 289.50 1.78 -62.99 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.26 Total: 18.38 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 2.56 Total: -36.14 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.08 Total: -92.24 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.77 1.78 -62.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.806 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds