Wall clock time and date at job start Mon Mar 30 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 115.54993 * 2 1 4 4 C 1.53002 * 117.51543 * 214.30762 * 2 1 3 5 5 C 1.52999 * 59.99986 * 252.51699 * 4 2 1 6 6 H 1.09004 * 117.51587 * 252.52118 * 5 4 2 7 7 C 1.52991 * 117.49944 * 107.49088 * 5 4 2 8 8 H 1.09004 * 115.55179 * 325.70769 * 7 5 4 9 9 C 1.53003 * 117.51762 * 180.02562 * 7 5 4 10 10 C 1.52997 * 59.99980 * 252.51995 * 9 7 5 11 11 H 1.08997 * 117.52027 * 107.48331 * 10 9 7 12 12 C 1.53004 * 117.49588 * 252.51119 * 10 9 7 13 13 N 1.46901 * 109.46916 * 243.62075 * 12 10 9 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99826 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46802 * 60.00722 * 19 17 15 21 21 H 1.48498 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47344 * 300.00519 * 19 17 15 23 23 H 1.08998 * 109.46901 * 274.32555 * 1 2 3 24 24 H 1.09000 * 109.47057 * 34.32257 * 1 2 3 25 25 H 1.08994 * 109.47238 * 154.32369 * 1 2 3 26 26 H 1.09006 * 117.49897 * 145.02816 * 4 2 1 27 27 H 1.08995 * 117.50073 * 0.02562 * 4 2 1 28 28 H 1.08999 * 117.49682 * 145.02464 * 9 7 5 29 29 H 1.09002 * 117.49850 * 0.02562 * 9 7 5 30 30 H 1.09004 * 109.46889 * 123.62456 * 12 10 9 31 31 H 1.08995 * 109.47384 * 3.62096 * 12 10 9 32 32 H 1.00901 * 111.00067 * 303.95263 * 13 12 10 33 33 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 34 34 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 35 35 H 0.96997 * 120.00392 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7648 5 6 2.2365 -1.1209 0.7652 6 1 3.1712 -0.8747 1.2690 7 6 1.3589 -2.1562 1.4714 8 1 0.4242 -2.4023 0.9675 9 6 1.3578 -2.1561 3.0014 10 6 2.0654 -3.2767 2.2370 11 1 3.1554 -3.2763 2.2375 12 6 1.4060 -4.6573 2.2365 13 7 2.2842 -5.6196 2.9152 14 6 1.6824 -6.9596 2.9335 15 6 2.6095 -7.9172 3.6366 16 1 3.5515 -7.5654 4.0309 17 6 2.2549 -9.2421 3.7775 18 7 1.1077 -9.6703 3.2979 19 14 3.4045 -10.4292 4.6485 20 1 3.6293 -9.9679 6.0420 21 1 2.7961 -11.7837 4.6671 22 1 4.7022 -10.4797 3.9284 23 1 -0.3633 0.0775 1.0247 24 1 -0.3633 0.8487 -0.5794 25 1 -0.3633 -0.9261 -0.4452 26 1 3.1721 -0.8749 -1.2679 27 1 1.6119 -1.8583 -1.2685 28 1 0.4224 -2.4024 3.5039 29 1 1.9820 -1.4181 3.5051 30 1 1.2390 -4.9799 1.2088 31 1 0.4516 -4.6043 2.7603 32 1 3.1978 -5.6397 2.4873 33 1 0.7297 -6.9228 3.4618 34 1 1.5177 -7.2979 1.9105 35 1 0.8583 -10.6024 3.3966 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716606392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:11 Heat of formation + Delta-G solvation = 31.020964 kcal Electronic energy + Delta-G solvation = -13147.787330 eV Core-core repulsion = 10953.556964 eV Total energy + Delta-G solvation = -2194.230366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92958 -36.39865 -34.32596 -32.17543 -28.64310 -27.56424 -24.56462 -23.31847 -21.54946 -21.25390 -20.28944 -19.17448 -16.43031 -15.85345 -15.03701 -14.76017 -14.37199 -13.76121 -13.30150 -13.18034 -12.77375 -12.51138 -12.37884 -11.68459 -11.58397 -11.43607 -11.09884 -11.02364 -10.79052 -10.69243 -10.61210 -10.21131 -9.94254 -9.56684 -9.23632 -9.05235 -8.44840 -7.23309 -6.00825 -4.02805 3.35501 3.38936 3.42318 3.50118 4.22089 4.41764 4.49156 4.69474 4.87757 5.12626 5.17854 5.23572 5.29574 5.34937 5.38340 5.68276 5.69935 5.72846 5.78840 5.82175 5.92828 6.03859 6.08187 6.17530 6.23304 6.29419 6.37236 6.66251 7.28550 7.45017 7.81281 8.15949 8.43919 8.65471 9.06414 9.61953 11.10400 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.072411 B = 0.004586 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.588248 B = 6104.166050 C = 6145.527426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.154 4.154 3 H 0.100 0.900 4 C -0.175 4.175 5 C -0.113 4.113 6 H 0.101 0.899 7 C -0.128 4.128 8 H 0.102 0.898 9 C -0.167 4.167 10 C -0.129 4.129 11 H 0.103 0.897 12 C 0.089 3.911 13 N -0.688 5.688 14 C 0.193 3.807 15 C -0.514 4.514 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.328 0.672 33 H 0.027 0.973 34 H -0.014 1.014 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 17.180 -6.111 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 H 0.118 0.882 4 C -0.212 4.212 5 C -0.132 4.132 6 H 0.119 0.881 7 C -0.146 4.146 8 H 0.120 0.880 9 C -0.204 4.204 10 C -0.147 4.147 11 H 0.121 0.879 12 C -0.041 4.041 13 N -0.318 5.318 14 C 0.066 3.934 15 C -0.553 4.553 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.045 0.955 34 H 0.003 0.997 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.179 17.159 -5.491 18.017 hybrid contribution 0.669 -0.993 -0.483 1.292 sum 0.490 16.166 -5.974 17.241 Atomic orbital electron populations 1.21325 0.92926 1.01588 1.01907 1.22339 0.95508 0.94157 1.05252 0.88220 1.23094 1.02406 1.01407 0.94336 1.21802 0.99767 0.98322 0.93270 0.88063 1.21807 1.00159 0.98981 0.93695 0.88032 1.23020 1.02662 1.01718 0.92969 1.22409 0.99001 0.90484 1.02853 0.87909 1.21458 0.96618 0.89962 0.96077 1.60654 1.04909 1.09824 1.56437 1.19553 0.95696 0.82945 0.95162 1.21164 1.04662 0.93008 1.36475 0.91988 1.24996 0.95422 0.98325 0.95856 1.69953 1.21612 1.16064 1.46225 0.86529 0.80732 0.79741 0.80208 1.20134 1.21342 1.20261 0.92010 0.92648 0.92512 0.89065 0.88741 0.88863 0.89261 0.96148 0.91798 0.85570 0.95484 0.99651 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.05 37.16 0.34 -0.75 16 2 C -0.15 -1.49 6.41 -90.62 -0.58 -2.07 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.18 -1.79 9.90 -26.73 -0.26 -2.05 16 5 C -0.11 -1.26 5.85 -90.62 -0.53 -1.79 16 6 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 7 C -0.13 -1.61 4.90 -90.62 -0.44 -2.06 16 8 H 0.10 1.29 7.19 -51.93 -0.37 0.92 16 9 C -0.17 -2.20 9.90 -26.73 -0.26 -2.47 16 10 C -0.13 -1.94 5.67 -90.62 -0.51 -2.46 16 11 H 0.10 1.55 8.13 -51.93 -0.42 1.13 16 12 C 0.09 1.65 5.97 -3.82 -0.02 1.62 16 13 N -0.69 -15.36 6.49 -115.05 -0.75 -16.11 16 14 C 0.19 5.23 5.44 -4.97 -0.03 5.21 16 15 C -0.51 -14.95 9.32 -34.44 -0.32 -15.27 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.53 7.40 -51.93 -0.38 0.15 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 28 H 0.09 1.24 8.03 -51.93 -0.42 0.82 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 32 H 0.33 6.97 8.71 -39.29 -0.34 6.62 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -30.05 293.27 -9.46 -39.50 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.12 Total: 2.37 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.73 Total: -20.57 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.01 Total: -42.70 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.05 -9.46 -39.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.525 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds