Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 115.54993 * 2 1 4 4 C 1.53002 * 117.51543 * 214.30762 * 2 1 3 5 5 C 1.52999 * 59.99986 * 252.51699 * 4 2 1 6 6 H 1.09004 * 117.51587 * 252.52118 * 5 4 2 7 7 C 1.52991 * 117.49944 * 107.49088 * 5 4 2 8 8 H 1.09004 * 115.55179 * 325.70769 * 7 5 4 9 9 C 1.53003 * 117.51762 * 180.02562 * 7 5 4 10 10 C 1.52997 * 59.99980 * 252.51995 * 9 7 5 11 11 H 1.08997 * 117.52027 * 107.48331 * 10 9 7 12 12 C 1.53004 * 117.49588 * 252.51119 * 10 9 7 13 13 N 1.46901 * 109.46916 * 243.62075 * 12 10 9 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99826 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46802 * 60.00722 * 19 17 15 21 21 H 1.48498 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47344 * 300.00519 * 19 17 15 23 23 H 1.08998 * 109.46901 * 274.32555 * 1 2 3 24 24 H 1.09000 * 109.47057 * 34.32257 * 1 2 3 25 25 H 1.08994 * 109.47238 * 154.32369 * 1 2 3 26 26 H 1.09006 * 117.49897 * 145.02816 * 4 2 1 27 27 H 1.08995 * 117.50073 * 0.02562 * 4 2 1 28 28 H 1.08999 * 117.49682 * 145.02464 * 9 7 5 29 29 H 1.09002 * 117.49850 * 0.02562 * 9 7 5 30 30 H 1.09004 * 109.46889 * 123.62456 * 12 10 9 31 31 H 1.08995 * 109.47384 * 3.62096 * 12 10 9 32 32 H 1.00901 * 111.00067 * 303.95263 * 13 12 10 33 33 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 34 34 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 35 35 H 0.96997 * 120.00392 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7648 5 6 2.2365 -1.1209 0.7652 6 1 3.1712 -0.8747 1.2690 7 6 1.3589 -2.1562 1.4714 8 1 0.4242 -2.4023 0.9675 9 6 1.3578 -2.1561 3.0014 10 6 2.0654 -3.2767 2.2370 11 1 3.1554 -3.2763 2.2375 12 6 1.4060 -4.6573 2.2365 13 7 2.2842 -5.6196 2.9152 14 6 1.6824 -6.9596 2.9335 15 6 2.6095 -7.9172 3.6366 16 1 3.5515 -7.5654 4.0309 17 6 2.2549 -9.2421 3.7775 18 7 1.1077 -9.6703 3.2979 19 14 3.4045 -10.4292 4.6485 20 1 3.6293 -9.9679 6.0420 21 1 2.7961 -11.7837 4.6671 22 1 4.7022 -10.4797 3.9284 23 1 -0.3633 0.0775 1.0247 24 1 -0.3633 0.8487 -0.5794 25 1 -0.3633 -0.9261 -0.4452 26 1 3.1721 -0.8749 -1.2679 27 1 1.6119 -1.8583 -1.2685 28 1 0.4224 -2.4024 3.5039 29 1 1.9820 -1.4181 3.5051 30 1 1.2390 -4.9799 1.2088 31 1 0.4516 -4.6043 2.7603 32 1 3.1978 -5.6397 2.4873 33 1 0.7297 -6.9228 3.4618 34 1 1.5177 -7.2979 1.9105 35 1 0.8583 -10.6024 3.3966 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716606392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = 13.416934 kcal Electronic energy + Delta-G solvation = -13148.550698 eV Core-core repulsion = 10953.556964 eV Total energy + Delta-G solvation = -2194.993734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92359 -37.66396 -36.02688 -34.24816 -29.65218 -29.24804 -26.34051 -24.35298 -23.43921 -22.26385 -21.56570 -20.07979 -18.57198 -16.91252 -16.57369 -16.28091 -16.11453 -15.13727 -14.69900 -14.34463 -14.02220 -13.93597 -13.46115 -13.29350 -13.19512 -12.76596 -12.65259 -12.35046 -12.26842 -12.09063 -11.87619 -11.77039 -11.35237 -11.18393 -10.68299 -10.53996 -10.13195 -9.12821 -8.23631 -6.35687 1.41172 1.45368 1.53443 2.39576 2.56428 3.09418 3.23523 3.38590 3.80055 3.88707 3.94637 4.13098 4.29936 4.35977 4.43561 4.48778 4.51000 4.74800 4.76947 4.93188 4.96175 4.98178 5.00319 5.07030 5.22093 5.23431 5.26470 5.33009 5.42298 5.48292 5.60202 5.99963 6.42766 6.70189 6.86930 7.35483 8.88090 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.072411 B = 0.004586 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.588248 B = 6104.166050 C = 6145.527426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.143 4.143 3 H 0.115 0.885 4 C -0.178 4.178 5 C -0.128 4.128 6 H 0.106 0.894 7 C -0.107 4.107 8 H 0.099 0.901 9 C -0.160 4.160 10 C -0.146 4.146 11 H 0.104 0.896 12 C 0.092 3.908 13 N -0.686 5.686 14 C 0.207 3.793 15 C -0.539 4.539 16 H 0.066 0.934 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.977 3.023 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.335 0.665 33 H -0.002 1.002 34 H -0.040 1.040 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 18.247 -5.967 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 H 0.133 0.867 4 C -0.215 4.215 5 C -0.146 4.146 6 H 0.124 0.876 7 C -0.126 4.126 8 H 0.117 0.883 9 C -0.197 4.197 10 C -0.165 4.165 11 H 0.123 0.877 12 C -0.037 4.037 13 N -0.316 5.316 14 C 0.079 3.921 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.800 3.200 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.190 1.190 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.017 0.983 34 H -0.022 1.022 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.905 18.255 -5.355 19.046 hybrid contribution 0.277 -1.275 -0.568 1.423 sum 1.182 16.981 -5.924 18.023 Atomic orbital electron populations 1.21362 0.92642 1.01948 1.02049 1.22446 0.95761 0.94371 1.03508 0.86674 1.23159 1.03037 1.01649 0.93620 1.21809 1.00082 0.98946 0.93787 0.87581 1.21792 0.99675 0.97540 0.93560 0.88260 1.23094 1.02351 1.00628 0.93641 1.22204 0.98972 0.89067 1.06239 0.87747 1.21460 0.96036 0.91151 0.95097 1.60541 1.05607 1.07955 1.57543 1.19221 0.94572 0.85303 0.93030 1.21527 1.05140 0.93977 1.37098 0.91613 1.26002 0.97121 1.00286 0.96360 1.70087 1.23505 1.16750 1.47189 0.85329 0.78574 0.76997 0.79058 1.19235 1.20666 1.18970 0.92157 0.91165 0.93179 0.87892 0.89386 0.89104 0.87693 0.96688 0.92649 0.84760 0.98347 1.02249 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.05 71.98 0.65 -1.33 16 2 C -0.14 -2.41 6.41 -10.79 -0.07 -2.48 16 3 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.18 -3.28 9.90 30.59 0.30 -2.98 16 5 C -0.13 -2.59 5.85 -10.80 -0.06 -2.65 16 6 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.11 -2.57 4.90 -10.80 -0.05 -2.62 16 8 H 0.10 2.44 7.19 -2.39 -0.02 2.42 16 9 C -0.16 -4.02 9.90 30.59 0.30 -3.72 16 10 C -0.15 -4.32 5.67 -10.79 -0.06 -4.38 16 11 H 0.10 3.07 8.13 -2.39 -0.02 3.05 16 12 C 0.09 3.48 5.97 86.30 0.51 3.99 16 13 N -0.69 -31.19 6.49 -517.92 -3.36 -34.56 16 14 C 0.21 11.58 5.44 85.55 0.47 12.05 16 15 C -0.54 -31.70 9.32 25.60 0.24 -31.47 16 16 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 17 C 0.00 0.03 5.46 84.66 0.46 0.49 16 18 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 19 Si 0.98 44.86 29.54 68.60 2.03 46.88 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.87 7.40 -2.39 -0.02 0.85 16 26 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 28 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 29 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 2.16 7.87 -2.39 -0.02 2.14 16 32 H 0.34 14.37 8.71 -89.69 -0.78 13.59 16 33 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -64.11 293.27 1.90 -62.21 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.26 Total: 17.93 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 2.69 Total: -35.09 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.08 Total: -91.93 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.11 1.90 -62.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.624 kcal (2) G-P(sol) polarization free energy of solvation -64.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds