Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55942 * 2 1 4 4 C 1.52999 * 117.49967 * 214.31272 * 2 1 3 5 5 C 1.52996 * 117.50143 * 145.68996 * 2 1 3 6 6 H 1.09002 * 117.50199 * 215.00298 * 5 2 1 7 7 C 1.53009 * 117.49964 * 0.02562 * 5 2 1 8 8 H 1.08994 * 115.56093 * 85.68304 * 7 5 2 9 9 C 1.52997 * 117.49590 * 231.37767 * 7 5 2 10 10 C 1.52995 * 117.49439 * 299.99979 * 7 5 2 11 11 H 1.08998 * 117.52610 * 359.97438 * 10 7 5 12 12 C 1.53006 * 117.49818 * 145.02014 * 10 7 5 13 13 N 1.46898 * 109.47138 * 185.01157 * 12 10 7 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47074 * 119.99839 * 19 17 15 22 22 H 1.48505 * 109.46997 * 239.99833 * 19 17 15 23 23 H 1.09007 * 109.46936 * 274.30530 * 1 2 3 24 24 H 1.08991 * 109.47335 * 34.30617 * 1 2 3 25 25 H 1.08995 * 109.46860 * 154.31437 * 1 2 3 26 26 H 1.09002 * 117.49810 * 145.01512 * 4 2 1 27 27 H 1.08998 * 117.50065 * 0.02562 * 4 2 1 28 28 H 1.08993 * 117.50222 * 359.97438 * 9 7 5 29 29 H 1.09002 * 117.51399 * 214.96562 * 9 7 5 30 30 H 1.08997 * 109.46770 * 65.01103 * 12 10 7 31 31 H 1.08995 * 109.47019 * 305.01317 * 12 10 7 32 32 H 1.00901 * 111.00121 * 56.04666 * 13 12 10 33 33 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 34 34 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 35 35 H 0.96992 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7649 6 1 3.1714 -0.8750 1.2686 7 6 1.3589 -2.1566 1.4709 8 1 1.0289 -2.9923 0.8540 9 6 1.6472 -2.4384 2.9468 10 6 0.3974 -1.6510 2.5483 11 1 0.3901 -0.5807 2.7548 12 6 -0.9537 -2.3573 2.6773 13 7 -1.7775 -1.6602 3.6740 14 6 -3.0851 -2.3124 3.8252 15 6 -3.9000 -1.5715 4.8538 16 1 -3.4877 -0.7032 5.3462 17 6 -5.1716 -2.0027 5.1669 18 7 -5.6735 -3.0604 4.5677 19 14 -6.1820 -1.0839 6.4414 20 1 -5.3958 0.0625 6.9638 21 1 -7.4318 -0.5831 5.8149 22 1 -6.5215 -2.0010 7.5590 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5792 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1715 -0.8751 -1.2684 27 1 1.6113 -1.8582 -1.2687 28 1 2.4623 -1.8865 3.4147 29 1 1.5069 -3.4596 3.3012 30 1 -0.7958 -3.3884 2.9935 31 1 -1.4627 -2.3467 1.7136 32 1 -1.8846 -0.6854 3.4366 33 1 -3.6091 -2.3019 2.8695 34 1 -2.9416 -3.3431 4.1496 35 1 -6.5679 -3.3640 4.7883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716606395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = 33.042934 kcal Electronic energy + Delta-G solvation = -13432.475304 eV Core-core repulsion = 11238.332617 eV Total energy + Delta-G solvation = -2194.142687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.05801 -36.18022 -34.29716 -32.18709 -28.71135 -27.43897 -24.51261 -23.32970 -21.50164 -21.25373 -20.37267 -19.06712 -16.40826 -15.80434 -14.94684 -14.80329 -14.39048 -13.95217 -13.32444 -13.10634 -12.59557 -12.36664 -12.26074 -11.64715 -11.45352 -11.42062 -11.22618 -10.88913 -10.75205 -10.68087 -10.40563 -10.34800 -9.91364 -9.48477 -9.24656 -9.08343 -8.46081 -7.23637 -6.01615 -4.03424 3.32291 3.39342 3.44766 3.61144 4.07527 4.43701 4.54010 4.79274 4.90529 5.06154 5.20803 5.32882 5.34375 5.35492 5.48889 5.72454 5.78169 5.80602 5.85044 5.93686 6.02669 6.08325 6.13742 6.20088 6.27482 6.34077 6.40470 6.68104 7.28041 7.44343 7.81330 8.15280 8.43246 8.64911 9.06450 9.61598 11.09680 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.054556 B = 0.005384 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.108857 B = 5199.135392 C = 5360.094782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.148 4.148 3 H 0.099 0.901 4 C -0.177 4.177 5 C -0.118 4.118 6 H 0.101 0.899 7 C -0.128 4.128 8 H 0.101 0.899 9 C -0.169 4.169 10 C -0.125 4.125 11 H 0.104 0.896 12 C 0.088 3.912 13 N -0.688 5.688 14 C 0.193 3.807 15 C -0.513 4.513 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.328 0.672 33 H -0.014 1.014 34 H 0.027 0.973 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 3.737 -8.657 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.166 4.166 3 H 0.117 0.883 4 C -0.214 4.214 5 C -0.136 4.136 6 H 0.119 0.881 7 C -0.146 4.146 8 H 0.119 0.881 9 C -0.206 4.206 10 C -0.144 4.144 11 H 0.123 0.877 12 C -0.042 4.042 13 N -0.318 5.318 14 C 0.066 3.934 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.144 0.856 33 H 0.003 0.997 34 H 0.045 0.955 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.120 3.280 -8.121 16.616 hybrid contribution -1.008 0.586 -0.183 1.180 sum 13.112 3.867 -8.304 15.995 Atomic orbital electron populations 1.21402 0.92434 1.01527 1.02696 1.22353 0.95847 0.93930 1.04509 0.88306 1.23110 1.02289 1.02013 0.93998 1.21809 0.99725 0.98995 0.93048 0.88062 1.21786 1.01988 0.99845 0.91024 0.88113 1.23082 0.99962 1.01420 0.96120 1.22431 0.91198 0.99507 1.01261 0.87750 1.21472 0.91145 0.97724 0.93820 1.60636 1.18913 1.05676 1.46566 1.19559 0.83186 0.95275 0.95351 1.21238 0.98711 1.13065 1.22105 0.91886 1.24998 0.97750 0.95226 0.96657 1.69977 1.16747 1.24412 1.42720 0.86428 0.79883 0.79791 0.81228 1.19631 1.21099 1.20995 0.91253 0.92752 0.92575 0.89231 0.88858 0.89284 0.88897 0.91845 0.96146 0.85613 0.99657 0.95492 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.97 37.16 0.33 -1.12 16 2 C -0.15 -1.60 6.39 -90.62 -0.58 -2.17 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.18 -1.77 9.90 -26.73 -0.26 -2.03 16 5 C -0.12 -1.30 5.87 -90.62 -0.53 -1.83 16 6 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.13 -1.60 4.97 -90.62 -0.45 -2.05 16 8 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 9 C -0.17 -2.22 9.90 -26.73 -0.26 -2.49 16 10 C -0.13 -1.85 3.96 -90.62 -0.36 -2.21 16 11 H 0.10 1.57 7.28 -51.93 -0.38 1.19 16 12 C 0.09 1.61 5.97 -3.82 -0.02 1.59 16 13 N -0.69 -15.14 6.49 -115.05 -0.75 -15.88 16 14 C 0.19 5.18 5.44 -4.97 -0.03 5.16 16 15 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 16 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.33 6.85 8.71 -39.29 -0.34 6.50 16 33 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 289.99 15.07 4.37 4.37 Total: -1.00 -29.83 289.99 -9.28 -39.11 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.03 Total: 2.82 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -2.58 Total: -20.80 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.01 Total: -42.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.83 -9.28 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.152 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds