Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55942 * 2 1 4 4 C 1.52999 * 117.49967 * 214.31272 * 2 1 3 5 5 C 1.52996 * 117.50143 * 145.68996 * 2 1 3 6 6 H 1.09002 * 117.50199 * 215.00298 * 5 2 1 7 7 C 1.53009 * 117.49964 * 0.02562 * 5 2 1 8 8 H 1.08994 * 115.56093 * 85.68304 * 7 5 2 9 9 C 1.52997 * 117.49590 * 231.37767 * 7 5 2 10 10 C 1.52995 * 117.49439 * 299.99979 * 7 5 2 11 11 H 1.08998 * 117.52610 * 359.97438 * 10 7 5 12 12 C 1.53006 * 117.49818 * 145.02014 * 10 7 5 13 13 N 1.46898 * 109.47138 * 185.01157 * 12 10 7 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47074 * 119.99839 * 19 17 15 22 22 H 1.48505 * 109.46997 * 239.99833 * 19 17 15 23 23 H 1.09007 * 109.46936 * 274.30530 * 1 2 3 24 24 H 1.08991 * 109.47335 * 34.30617 * 1 2 3 25 25 H 1.08995 * 109.46860 * 154.31437 * 1 2 3 26 26 H 1.09002 * 117.49810 * 145.01512 * 4 2 1 27 27 H 1.08998 * 117.50065 * 0.02562 * 4 2 1 28 28 H 1.08993 * 117.50222 * 359.97438 * 9 7 5 29 29 H 1.09002 * 117.51399 * 214.96562 * 9 7 5 30 30 H 1.08997 * 109.46770 * 65.01103 * 12 10 7 31 31 H 1.08995 * 109.47019 * 305.01317 * 12 10 7 32 32 H 1.00901 * 111.00121 * 56.04666 * 13 12 10 33 33 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 34 34 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 35 35 H 0.96992 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7649 6 1 3.1714 -0.8750 1.2686 7 6 1.3589 -2.1566 1.4709 8 1 1.0289 -2.9923 0.8540 9 6 1.6472 -2.4384 2.9468 10 6 0.3974 -1.6510 2.5483 11 1 0.3901 -0.5807 2.7548 12 6 -0.9537 -2.3573 2.6773 13 7 -1.7775 -1.6602 3.6740 14 6 -3.0851 -2.3124 3.8252 15 6 -3.9000 -1.5715 4.8538 16 1 -3.4877 -0.7032 5.3462 17 6 -5.1716 -2.0027 5.1669 18 7 -5.6735 -3.0604 4.5677 19 14 -6.1820 -1.0839 6.4414 20 1 -5.3958 0.0625 6.9638 21 1 -7.4318 -0.5831 5.8149 22 1 -6.5215 -2.0010 7.5590 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5792 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1715 -0.8751 -1.2684 27 1 1.6113 -1.8582 -1.2687 28 1 2.4623 -1.8865 3.4147 29 1 1.5069 -3.4596 3.3012 30 1 -0.7958 -3.3884 2.9935 31 1 -1.4627 -2.3467 1.7136 32 1 -1.8846 -0.6854 3.4366 33 1 -3.6091 -2.3019 2.8695 34 1 -2.9416 -3.3431 4.1496 35 1 -6.5679 -3.3640 4.7883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716606395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = 15.470614 kcal Electronic energy + Delta-G solvation = -13433.237297 eV Core-core repulsion = 11238.332617 eV Total energy + Delta-G solvation = -2194.904680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07423 -37.50032 -35.94770 -34.24537 -29.90910 -29.12482 -26.27225 -24.34829 -23.43212 -22.20630 -21.66714 -20.02928 -18.57077 -16.79603 -16.61826 -16.28633 -16.02658 -15.34518 -14.69487 -14.50209 -14.10829 -13.80862 -13.50807 -13.19730 -13.05014 -12.70358 -12.66799 -12.32522 -12.23707 -12.10608 -11.99686 -11.53406 -11.31022 -11.21147 -10.69576 -10.47176 -10.22024 -9.11526 -8.23812 -6.35523 1.41169 1.42125 1.56340 2.39599 2.65726 3.08021 3.09532 3.45243 3.81099 3.86149 4.02985 4.06567 4.23406 4.42587 4.47618 4.50066 4.61252 4.74757 4.77087 4.94075 4.97190 4.98821 5.00226 5.07630 5.22475 5.24593 5.30730 5.32128 5.42247 5.49521 5.61091 6.00482 6.43439 6.71156 6.87785 7.35864 8.88323 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.054556 B = 0.005384 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.108857 B = 5199.135392 C = 5360.094782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.152 4.152 3 H 0.113 0.887 4 C -0.167 4.167 5 C -0.125 4.125 6 H 0.115 0.885 7 C -0.109 4.109 8 H 0.098 0.902 9 C -0.164 4.164 10 C -0.138 4.138 11 H 0.105 0.895 12 C 0.093 3.907 13 N -0.685 5.685 14 C 0.207 3.793 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.278 1.278 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.015 0.985 32 H 0.335 0.665 33 H -0.040 1.040 34 H -0.002 1.002 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.121 4.936 -8.541 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 H 0.131 0.869 4 C -0.203 4.203 5 C -0.143 4.143 6 H 0.133 0.867 7 C -0.128 4.128 8 H 0.116 0.884 9 C -0.201 4.201 10 C -0.156 4.156 11 H 0.123 0.877 12 C -0.037 4.037 13 N -0.316 5.316 14 C 0.079 3.921 15 C -0.574 4.574 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.152 0.848 33 H -0.023 1.023 34 H 0.016 0.984 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.249 4.485 -8.017 17.802 hybrid contribution -1.328 0.173 -0.273 1.366 sum 13.921 4.658 -8.290 16.859 Atomic orbital electron populations 1.21381 0.93608 1.01425 1.01719 1.22391 0.94980 0.94774 1.04863 0.86932 1.23183 1.02840 1.01148 0.93179 1.21847 0.99906 0.98742 0.93851 0.86744 1.21793 1.00482 0.99750 0.90780 0.88397 1.23173 0.99059 1.01111 0.96734 1.22178 0.89816 0.99228 1.04421 0.87738 1.21459 0.92496 0.97336 0.92383 1.60521 1.16592 1.06084 1.48399 1.19216 0.85122 0.94032 0.93699 1.21580 0.99576 1.13477 1.22787 0.91642 1.25991 0.98969 0.96008 0.98803 1.70104 1.17391 1.25915 1.44190 0.85238 0.78049 0.78552 0.78163 1.18563 1.20177 1.20321 0.92831 0.91854 0.93563 0.87265 0.89189 0.87601 0.89183 0.92846 0.96648 0.84790 1.02252 0.98409 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.97 71.98 0.65 -2.17 16 2 C -0.15 -2.95 6.39 -10.80 -0.07 -3.01 16 3 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.17 -2.90 9.90 30.59 0.30 -2.59 16 5 C -0.13 -2.47 5.87 -10.79 -0.06 -2.54 16 6 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 7 C -0.11 -2.60 4.97 -10.79 -0.05 -2.65 16 8 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 9 C -0.16 -4.07 9.90 30.59 0.30 -3.77 16 10 C -0.14 -4.00 3.96 -10.79 -0.04 -4.04 16 11 H 0.10 3.06 7.28 -2.39 -0.02 3.04 16 12 C 0.09 3.46 5.97 86.31 0.51 3.97 16 13 N -0.69 -30.84 6.49 -517.92 -3.36 -34.20 16 14 C 0.21 11.54 5.44 85.56 0.47 12.00 16 15 C -0.54 -31.37 9.32 25.60 0.24 -31.13 16 16 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 19 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H 0.05 1.37 5.95 -2.38 -0.01 1.36 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.11 7.90 -2.39 -0.02 1.09 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 2.29 8.03 -2.39 -0.02 2.28 16 30 H 0.05 2.07 7.87 -2.39 -0.02 2.05 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.33 14.21 8.71 -89.69 -0.78 13.43 16 33 H -0.04 -2.39 8.14 -2.38 -0.02 -2.41 16 34 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -63.78 289.99 1.92 -61.86 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.26 Total: 18.22 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.70 Total: -35.45 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -3.08 Total: -91.46 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.78 1.92 -61.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.331 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds