Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47324 * 2 1 4 4 C 1.53003 * 109.47071 * 239.99666 * 2 1 3 5 5 C 1.50702 * 109.46804 * 175.00353 * 4 2 1 6 6 H 1.08001 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99815 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99775 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47094 * 90.00281 * 9 7 5 11 11 H 1.48500 * 109.46886 * 209.99907 * 9 7 5 12 12 H 1.48495 * 109.47160 * 330.00057 * 9 7 5 13 13 N 1.46905 * 109.47040 * 119.99971 * 2 1 3 14 14 C 1.46906 * 110.99792 * 275.00065 * 13 2 1 15 15 H 1.08996 * 115.56003 * 350.69344 * 14 13 2 16 16 C 1.53068 * 117.51350 * 136.39044 * 14 13 2 17 17 C 1.52990 * 59.98492 * 107.47409 * 16 14 13 18 18 H 1.09008 * 117.49760 * 107.49570 * 17 16 14 19 19 C 1.53003 * 117.50425 * 252.49746 * 17 16 14 20 20 C 1.53000 * 117.49792 * 128.74505 * 19 17 16 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 17 22 22 H 1.08996 * 109.46860 * 300.00226 * 1 2 3 23 23 H 1.09004 * 109.46867 * 60.00341 * 1 2 3 24 24 H 1.09000 * 109.46625 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47160 * 294.99811 * 4 2 1 26 26 H 1.08997 * 109.46985 * 55.00104 * 4 2 1 27 27 H 0.96998 * 119.99805 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00059 * 151.05062 * 13 2 1 29 29 H 1.09011 * 117.51285 * 0.02562 * 16 14 13 30 30 H 1.08998 * 117.49793 * 214.96549 * 16 14 13 31 31 H 1.08999 * 115.54778 * 343.07868 * 19 17 16 32 32 H 1.09002 * 117.49833 * 214.98161 * 20 19 17 33 33 H 1.09002 * 117.49953 * 359.97438 * 20 19 17 34 34 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 35 35 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0790 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0921 -1.0604 -2.4371 10 1 6.7009 -2.2130 -1.7257 11 1 6.5291 -1.0678 -3.8563 12 1 6.5262 0.2047 -1.7921 13 7 2.0197 -0.6925 1.1995 14 6 2.0825 0.2227 2.3470 15 1 1.9214 1.2760 2.1177 16 6 1.5681 -0.2943 3.6927 17 6 3.0702 -0.1140 3.4658 18 1 3.5595 0.7181 3.9724 19 6 3.9172 -1.3779 3.3039 20 6 4.8425 -1.4573 2.0880 21 6 5.4312 -1.2419 3.4838 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 1.7517 -1.7716 -1.2055 26 1 1.6055 -0.2619 -2.1369 27 1 4.0609 -2.2439 -4.0352 28 1 2.9174 -1.1205 1.0288 29 1 1.1834 -1.3138 3.7268 30 1 1.0688 0.4191 4.3483 31 1 3.4506 -2.3030 3.6425 32 1 4.9851 -2.4347 1.6270 33 1 4.8477 -0.6092 1.4032 34 1 5.9610 -2.0776 3.9410 35 1 5.8233 -0.2521 3.7174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716608731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = 32.781724 kcal Electronic energy + Delta-G solvation = -14159.004092 eV Core-core repulsion = 11964.850078 eV Total energy + Delta-G solvation = -2194.154014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.68331 -35.87493 -34.32444 -32.31332 -28.65725 -27.35853 -23.56266 -23.04360 -22.02737 -21.05851 -19.50273 -19.13242 -16.34520 -15.46343 -15.38119 -14.65493 -14.17175 -14.03666 -13.47707 -12.76758 -12.13197 -11.76181 -11.55247 -11.34457 -11.19329 -11.13250 -11.06641 -10.89527 -10.60194 -10.48440 -10.26154 -10.16314 -9.72737 -9.32613 -9.09569 -9.02619 -8.38956 -7.47661 -6.02441 -4.05337 3.29183 3.36281 3.38460 3.96166 4.32354 4.42935 4.66246 5.04188 5.17296 5.30120 5.34645 5.46413 5.65667 5.71520 5.81454 5.91412 5.99379 6.03422 6.17496 6.27296 6.36336 6.40549 6.44464 6.52562 6.60345 6.61091 6.96421 6.98595 7.58143 7.65617 7.97562 8.11946 8.35100 8.41586 9.00523 9.58590 11.08490 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.011885 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.370107 B = 2355.364336 C = 3323.153349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.030 0.970 4 C 0.018 3.982 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.654 5.654 14 C 0.036 3.964 15 H 0.090 0.910 16 C -0.171 4.171 17 C -0.144 4.144 18 H 0.098 0.902 19 C -0.116 4.116 20 C -0.173 4.173 21 C -0.185 4.185 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.022 0.978 27 H 0.261 0.739 28 H 0.364 0.636 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 2.495 11.556 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.048 0.952 4 C -0.019 4.019 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.291 5.291 14 C -0.076 4.076 15 H 0.108 0.892 16 C -0.209 4.209 17 C -0.164 4.164 18 H 0.116 0.884 19 C -0.134 4.134 20 C -0.210 4.210 21 C -0.222 4.222 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.190 0.810 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.027 2.129 11.506 11.746 hybrid contribution 1.821 0.579 -0.343 1.942 sum 0.794 2.707 11.163 11.514 Atomic orbital electron populations 1.21793 0.96699 1.01287 0.99459 1.21689 0.93457 0.95832 0.91229 0.95237 1.19303 0.95502 0.96207 0.90874 1.21165 0.92134 1.34435 1.08248 0.92977 1.24965 0.98061 0.95240 0.95696 1.69958 1.35420 1.35602 1.11946 0.86707 0.86203 0.78551 0.77292 1.20449 1.21258 1.19923 1.60342 1.34940 1.30279 1.03536 1.22532 1.01645 0.95418 0.87983 0.89207 1.23176 0.94869 1.02644 1.00224 1.22065 0.91302 0.98066 1.04931 0.88399 1.21555 0.90619 0.97684 1.03522 1.23060 1.02977 1.04224 0.90707 1.22954 0.95622 1.02314 1.01291 0.94351 0.93438 0.92741 0.95646 0.95961 0.92970 0.80954 0.88608 0.89601 0.87894 0.88367 0.88020 0.89249 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.42 37.16 0.35 -2.14 16 2 C 0.09 1.86 2.55 -67.71 -0.17 1.68 16 3 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 4 C 0.02 0.47 4.57 -27.88 -0.13 0.35 16 5 C -0.52 -14.18 8.12 -34.44 -0.28 -14.46 16 6 H 0.05 1.38 6.56 -52.49 -0.34 1.03 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.65 -13.01 6.37 -99.70 -0.64 -13.64 16 14 C 0.04 0.60 6.01 -67.68 -0.41 0.20 16 15 H 0.09 1.49 7.60 -51.93 -0.39 1.09 16 16 C -0.17 -2.44 10.18 -26.70 -0.27 -2.71 16 17 C -0.14 -2.14 5.86 -90.63 -0.53 -2.67 16 18 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 19 C -0.12 -1.74 5.38 -90.58 -0.49 -2.22 16 20 C -0.17 -2.89 8.15 -26.73 -0.22 -3.11 16 21 C -0.18 -2.54 10.26 -26.69 -0.27 -2.82 16 22 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.36 7.66 3.81 -39.29 -0.15 7.51 16 29 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.10 1.92 6.81 -51.93 -0.35 1.57 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 284.77 15.07 4.29 4.29 Total: -1.00 -28.34 284.77 -8.98 -37.32 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.84 Total: 7.65 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.52 Total: -26.26 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.10 Total: -39.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.34 -8.98 -37.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716608731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.106 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds