Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00097 * 2 1 3 5 5 C 1.50696 * 109.46919 * 174.99744 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 N 1.46904 * 109.47219 * 119.99865 * 2 1 3 14 14 C 1.46893 * 111.00244 * 275.00615 * 13 2 1 15 15 C 1.53000 * 109.47101 * 180.02562 * 14 13 2 16 16 C 1.54633 * 111.03442 * 287.01859 * 15 14 13 17 17 C 1.51101 * 104.72286 * 217.33297 * 16 15 14 18 18 C 1.30528 * 111.10808 * 16.44068 * 17 16 15 19 19 C 1.51105 * 111.10196 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 21 21 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 23 23 H 1.09000 * 109.46497 * 55.00010 * 4 2 1 24 24 H 1.08999 * 109.46623 * 295.00074 * 4 2 1 25 25 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 26 26 H 1.00901 * 110.99902 * 151.04604 * 13 2 1 27 27 H 1.09010 * 109.47058 * 299.99884 * 14 13 2 28 28 H 1.08997 * 109.47437 * 59.99186 * 14 13 2 29 29 H 1.08995 * 110.91156 * 51.03270 * 15 14 13 30 30 H 1.09001 * 110.38817 * 336.14707 * 16 15 14 31 31 H 1.08998 * 110.38702 * 98.52829 * 16 15 14 32 32 H 1.08008 * 124.44769 * 196.45560 * 17 16 15 33 33 H 1.07995 * 124.45126 * 180.02562 * 18 17 16 34 34 H 1.09000 * 110.38595 * 224.75145 * 19 18 17 35 35 H 1.08999 * 110.48324 * 102.41923 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5395 7 6 4.2305 -1.1925 -2.3583 8 7 3.5760 -1.8317 -3.3031 9 14 6.0921 -1.0599 -2.4373 10 1 6.7010 -2.2125 -1.7259 11 1 6.5291 -1.0673 -3.8565 12 1 6.5261 0.2053 -1.7923 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2225 2.3469 15 6 2.5962 -0.5330 3.5742 16 6 1.5177 -1.4938 4.1262 17 6 1.6738 -1.4244 5.6275 18 6 2.3704 -0.3783 5.9799 19 6 2.7957 0.4241 4.7721 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6055 -0.2616 -2.1369 24 1 1.7517 -1.7715 -1.2055 25 1 2.6093 -1.9003 -3.2623 26 1 2.9174 -1.1205 1.0287 27 1 2.7588 1.0462 2.1183 28 1 1.0871 0.6163 2.5525 29 1 3.5173 -1.0684 3.3440 30 1 0.5234 -1.1579 3.8318 31 1 1.6967 -2.5091 3.7725 32 1 1.2630 -2.1458 6.3185 33 1 2.6120 -0.1206 7.0004 34 1 3.8433 0.7128 4.8578 35 1 2.1670 1.3074 4.6604 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717266055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = -10.158161 kcal Electronic energy + Delta-G solvation = -13752.266026 eV Core-core repulsion = 11556.249999 eV Total energy + Delta-G solvation = -2196.016027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.79325 -36.39233 -33.10091 -31.28601 -28.28265 -27.89447 -27.01824 -23.67919 -22.65111 -20.04774 -19.45388 -18.64779 -16.72989 -16.04840 -15.15356 -14.91372 -14.19348 -13.72423 -13.07971 -12.69290 -12.55650 -12.22716 -12.05676 -11.77461 -11.34480 -11.11273 -11.09291 -10.98921 -10.90332 -10.66004 -10.53130 -10.24180 -10.12942 -9.46279 -8.82131 -8.53917 -8.33874 -7.65939 -6.36738 -4.06234 2.29944 3.42466 3.45740 3.61065 4.53409 4.59051 4.78369 4.97261 5.21990 5.38241 5.43891 5.50791 5.72655 5.85334 5.86277 5.89721 6.01546 6.04880 6.14706 6.17321 6.25214 6.26332 6.45648 6.57343 6.58748 6.80982 6.84681 6.95243 7.31459 7.43200 7.96281 8.16434 8.27095 8.44000 8.87700 9.66182 11.03959 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033638 B = 0.007267 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.186480 B = 3851.988842 C = 4378.755440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.029 0.971 4 C 0.007 3.993 5 C -0.603 4.603 6 H 0.045 0.955 7 C 0.017 3.983 8 N -0.911 5.911 9 Si 1.069 2.931 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.290 1.290 13 N -0.682 5.682 14 C 0.070 3.930 15 C -0.089 4.089 16 C -0.086 4.086 17 C -0.166 4.166 18 C -0.176 4.176 19 C -0.096 4.096 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.037 0.963 23 H 0.011 0.989 24 H 0.017 0.983 25 H 0.270 0.730 26 H 0.354 0.646 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 3.146 14.653 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 H 0.047 0.953 4 C -0.031 4.031 5 C -0.642 4.642 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.547 5.547 9 Si 0.897 3.103 10 H -0.214 1.214 11 H -0.210 1.210 12 H -0.216 1.216 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.108 4.108 16 C -0.123 4.123 17 C -0.183 4.183 18 C -0.193 4.193 19 C -0.134 4.134 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.175 0.825 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.317 2.482 13.890 14.299 hybrid contribution -0.574 1.010 0.809 1.416 sum -2.891 3.492 14.699 15.382 Atomic orbital electron populations 1.21809 0.96787 1.01258 0.99519 1.21445 0.93170 0.95777 0.91166 0.95315 1.19405 0.96522 0.95567 0.91576 1.22012 0.91934 1.38632 1.11577 0.93635 1.25793 1.06765 0.93485 0.92653 1.70738 1.10488 1.39777 1.33708 0.83544 0.74503 0.75993 0.76214 1.21408 1.20993 1.21648 1.60549 1.34767 1.32064 1.04191 1.21939 0.99356 0.93898 0.90831 1.22031 0.98856 0.96109 0.93798 1.21315 0.99366 1.00340 0.91233 1.23438 0.99217 0.98101 0.97586 1.23232 1.00403 0.97235 0.98480 1.21396 1.01125 0.98290 0.92577 0.93462 0.92706 0.94339 0.97087 0.96507 0.91956 0.82483 0.95886 0.91898 0.90334 0.90562 0.91032 0.86396 0.86425 0.91501 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.42 37.16 0.35 -2.13 16 2 C 0.09 2.00 2.59 -67.71 -0.18 1.82 16 3 H 0.03 0.64 7.80 -51.93 -0.41 0.23 16 4 C 0.01 0.17 3.88 -27.88 -0.11 0.06 16 5 C -0.60 -16.87 8.12 -34.44 -0.28 -17.15 16 6 H 0.05 1.25 7.49 -52.49 -0.39 0.86 16 7 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 8 N -0.91 -27.93 13.65 55.43 0.76 -27.17 16 9 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.27 6.26 -106.72 -0.67 -13.93 16 14 C 0.07 1.13 4.79 -3.83 -0.02 1.11 16 15 C -0.09 -1.26 3.31 -88.91 -0.29 -1.56 16 16 C -0.09 -1.15 6.33 -26.83 -0.17 -1.32 16 17 C -0.17 -1.94 10.77 -35.70 -0.38 -2.32 16 18 C -0.18 -1.99 10.78 -35.70 -0.38 -2.37 16 19 C -0.10 -1.17 6.38 -26.83 -0.17 -1.34 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 23 H 0.01 0.30 8.00 -51.93 -0.42 -0.12 16 24 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 25 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 26 H 0.35 7.56 7.21 -39.29 -0.28 7.28 16 27 H 0.02 0.39 8.06 -51.92 -0.42 -0.03 16 28 H 0.06 0.98 7.22 -51.93 -0.37 0.61 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -29.35 283.88 -8.40 -37.75 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.95 Total: 3.62 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -1.73 Total: -24.80 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.09 Total: -41.11 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.35 -8.40 -37.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717266055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.596 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds