Wall clock time and date at job start Mon Mar 30 2020 02:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00097 * 2 1 3 5 5 C 1.50696 * 109.46919 * 174.99744 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 N 1.46904 * 109.47219 * 119.99865 * 2 1 3 14 14 C 1.46893 * 111.00244 * 275.00615 * 13 2 1 15 15 C 1.53000 * 109.47101 * 180.02562 * 14 13 2 16 16 C 1.54633 * 111.03442 * 287.01859 * 15 14 13 17 17 C 1.51101 * 104.72286 * 217.33297 * 16 15 14 18 18 C 1.30528 * 111.10808 * 16.44068 * 17 16 15 19 19 C 1.51105 * 111.10196 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 21 21 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 23 23 H 1.09000 * 109.46497 * 55.00010 * 4 2 1 24 24 H 1.08999 * 109.46623 * 295.00074 * 4 2 1 25 25 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 26 26 H 1.00901 * 110.99902 * 151.04604 * 13 2 1 27 27 H 1.09010 * 109.47058 * 299.99884 * 14 13 2 28 28 H 1.08997 * 109.47437 * 59.99186 * 14 13 2 29 29 H 1.08995 * 110.91156 * 51.03270 * 15 14 13 30 30 H 1.09001 * 110.38817 * 336.14707 * 16 15 14 31 31 H 1.08998 * 110.38702 * 98.52829 * 16 15 14 32 32 H 1.08008 * 124.44769 * 196.45560 * 17 16 15 33 33 H 1.07995 * 124.45126 * 180.02562 * 18 17 16 34 34 H 1.09000 * 110.38595 * 224.75145 * 19 18 17 35 35 H 1.08999 * 110.48324 * 102.41923 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5395 7 6 4.2305 -1.1925 -2.3583 8 7 3.5760 -1.8317 -3.3031 9 14 6.0921 -1.0599 -2.4373 10 1 6.7010 -2.2125 -1.7259 11 1 6.5291 -1.0673 -3.8565 12 1 6.5261 0.2053 -1.7923 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2225 2.3469 15 6 2.5962 -0.5330 3.5742 16 6 1.5177 -1.4938 4.1262 17 6 1.6738 -1.4244 5.6275 18 6 2.3704 -0.3783 5.9799 19 6 2.7957 0.4241 4.7721 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6055 -0.2616 -2.1369 24 1 1.7517 -1.7715 -1.2055 25 1 2.6093 -1.9003 -3.2623 26 1 2.9174 -1.1205 1.0287 27 1 2.7588 1.0462 2.1183 28 1 1.0871 0.6163 2.5525 29 1 3.5173 -1.0684 3.3440 30 1 0.5234 -1.1579 3.8318 31 1 1.6967 -2.5091 3.7725 32 1 1.2630 -2.1458 6.3185 33 1 2.6120 -0.1206 7.0004 34 1 3.8433 0.7128 4.8578 35 1 2.1670 1.3074 4.6604 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717266055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:28 Heat of formation + Delta-G solvation = -27.428589 kcal Electronic energy + Delta-G solvation = -13753.014928 eV Core-core repulsion = 11556.249999 eV Total energy + Delta-G solvation = -2196.764929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.89685 -38.01555 -35.12102 -32.81210 -29.51602 -28.97764 -28.94255 -25.33969 -24.41926 -21.50020 -20.87539 -19.57063 -18.89454 -17.15989 -16.50176 -16.39556 -15.65625 -15.63738 -14.92222 -14.39218 -13.59629 -13.56351 -13.39060 -13.08394 -13.02352 -12.95401 -12.60142 -12.45680 -12.21580 -11.98042 -11.95773 -11.87257 -11.60590 -11.30168 -10.65010 -10.55906 -9.73916 -9.24679 -8.68352 -6.38561 1.41963 1.50920 1.59782 1.76618 2.55144 3.12096 3.32271 3.78847 3.82702 4.00176 4.17270 4.40826 4.44533 4.49651 4.59324 4.62411 4.72738 4.87833 4.89400 4.91272 4.97586 5.06020 5.14619 5.15104 5.16279 5.27962 5.42145 5.44834 5.66314 5.96068 6.07786 6.17243 6.32211 6.52494 6.61135 7.42900 8.72445 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033638 B = 0.007267 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.186480 B = 3851.988842 C = 4378.755440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.100 3.900 3 H 0.021 0.979 4 C 0.011 3.989 5 C -0.609 4.609 6 H 0.048 0.952 7 C -0.037 4.037 8 N -0.937 5.937 9 Si 1.118 2.882 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.682 5.682 14 C 0.073 3.927 15 C -0.090 4.090 16 C -0.086 4.086 17 C -0.174 4.174 18 C -0.170 4.170 19 C -0.095 4.095 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.063 0.937 23 H -0.009 1.009 24 H -0.006 1.006 25 H 0.256 0.744 26 H 0.341 0.659 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 3.925 16.662 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.010 4.010 3 H 0.039 0.961 4 C -0.027 4.027 5 C -0.647 4.647 6 H 0.066 0.934 7 C -0.234 4.234 8 N -0.575 5.575 9 Si 0.939 3.061 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.315 5.315 14 C -0.056 4.056 15 C -0.109 4.109 16 C -0.123 4.123 17 C -0.192 4.192 18 C -0.188 4.188 19 C -0.133 4.133 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.009 0.991 24 H 0.012 0.988 25 H 0.065 0.935 26 H 0.160 0.840 27 H 0.036 0.964 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.839 3.272 15.925 16.361 hybrid contribution -0.771 0.784 0.193 1.117 sum -2.611 4.056 16.118 16.824 Atomic orbital electron populations 1.21716 0.94273 1.01499 1.01041 1.21314 0.95172 0.94541 0.89970 0.96103 1.19315 0.95679 0.94523 0.93152 1.22343 0.93160 1.37884 1.11312 0.93399 1.27339 1.11170 0.92674 0.92252 1.70877 1.09741 1.41799 1.35060 0.82918 0.69298 0.77325 0.76514 1.19717 1.20975 1.19642 1.60607 1.33838 1.32700 1.04313 1.21998 0.99942 0.93351 0.90296 1.21988 0.98481 0.96693 0.93776 1.21279 0.98750 0.99401 0.92878 1.23505 1.00063 0.99095 0.96512 1.23424 0.99565 0.96583 0.99209 1.21398 1.01881 0.98095 0.91899 0.92911 0.93098 0.91841 0.99122 0.98761 0.93496 0.84012 0.96439 0.90844 0.91547 0.91058 0.92185 0.84535 0.84001 0.90743 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.42 71.98 0.68 -3.85 16 2 C 0.10 4.24 2.59 44.92 0.12 4.35 16 3 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 4 C 0.01 0.56 3.88 29.85 0.12 0.67 16 5 C -0.61 -34.44 8.12 25.60 0.21 -34.23 16 6 H 0.05 2.64 7.49 -2.91 -0.02 2.61 16 7 C -0.04 -2.12 5.46 84.66 0.46 -1.66 16 8 N -0.94 -58.60 13.65 21.45 0.29 -58.31 16 9 Si 1.12 50.55 29.90 68.60 2.05 52.60 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 N -0.68 -26.41 6.26 -491.56 -3.08 -29.49 16 14 C 0.07 2.29 4.79 86.30 0.41 2.71 16 15 C -0.09 -2.45 3.31 -9.68 -0.03 -2.48 16 16 C -0.09 -2.20 6.33 30.53 0.19 -2.01 16 17 C -0.17 -3.65 10.77 26.26 0.28 -3.37 16 18 C -0.17 -3.33 10.78 26.26 0.28 -3.05 16 19 C -0.10 -2.08 6.38 30.53 0.19 -1.88 16 20 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 22 H 0.06 1.93 7.45 -2.39 -0.02 1.91 16 23 H -0.01 -0.53 8.00 -2.39 -0.02 -0.55 16 24 H -0.01 -0.34 8.01 -2.39 -0.02 -0.36 16 25 H 0.26 16.24 7.22 -92.71 -0.67 15.58 16 26 H 0.34 14.70 7.21 -89.69 -0.65 14.05 16 27 H 0.02 0.57 8.06 -2.38 -0.02 0.55 16 28 H 0.07 2.15 7.22 -2.39 -0.02 2.13 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.87 7.74 -2.39 -0.02 1.86 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 33 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.65 7.89 -2.39 -0.02 1.63 16 Total: -1.00 -62.87 283.88 2.67 -60.19 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.49 Total: 19.80 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 2.92 Total: -44.80 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -2.78 Total: -87.80 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.05 Total: 52.60 kcal Total: -62.87 2.67 -60.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717266055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.764 kcal (2) G-P(sol) polarization free energy of solvation -62.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds