Wall clock time and date at job start Mon Mar 30 2020 02:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47236 * 119.99523 * 2 1 3 5 5 H 1.08006 * 120.00215 * 119.99405 * 4 2 1 6 6 C 1.37880 * 120.00194 * 300.00174 * 4 2 1 7 7 N 1.31516 * 119.99845 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46904 * 59.99951 * 8 6 4 10 10 H 1.48503 * 109.46854 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47099 * 299.99899 * 8 6 4 12 12 N 1.46897 * 109.47089 * 239.99440 * 2 1 3 13 13 C 1.46906 * 110.99829 * 110.99455 * 12 2 1 14 14 C 1.52997 * 112.85007 * 70.96802 * 13 12 2 15 15 C 1.52998 * 117.49939 * 119.89979 * 14 13 12 16 16 C 1.52993 * 117.50057 * 51.27467 * 14 13 12 17 17 C 1.53780 * 113.60936 * 299.76964 * 13 12 2 18 18 C 1.53783 * 87.07916 * 219.93304 * 17 13 12 19 19 C 1.53784 * 87.08147 * 25.43792 * 18 17 13 20 20 H 1.09007 * 109.47253 * 179.76989 * 1 2 3 21 21 H 1.09000 * 109.47186 * 299.76658 * 1 2 3 22 22 H 1.09001 * 109.47430 * 59.77213 * 1 2 3 23 23 H 0.96991 * 119.99705 * 179.97438 * 7 6 4 24 24 H 1.00899 * 111.00391 * 347.04177 * 12 2 1 25 25 H 1.09001 * 115.54531 * 265.60331 * 14 13 12 26 26 H 1.08996 * 117.50169 * 359.97438 * 15 14 13 27 27 H 1.09001 * 117.49938 * 145.02095 * 15 14 13 28 28 H 1.09004 * 117.50158 * 214.97979 * 16 14 13 29 29 H 1.08995 * 117.50071 * 359.97438 * 16 14 13 30 30 H 1.08998 * 113.61447 * 105.39080 * 17 13 12 31 31 H 1.08991 * 113.69556 * 334.49159 * 17 13 12 32 32 H 1.09007 * 113.61372 * 139.98011 * 18 17 13 33 33 H 1.08999 * 113.61780 * 270.88331 * 18 17 13 34 34 H 1.08993 * 113.61910 * 89.11167 * 19 18 17 35 35 H 1.09001 * 113.61172 * 220.02265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3214 -1.1201 4.0081 9 1 3.8064 -1.1206 4.0082 10 1 1.8259 -0.4202 5.2205 11 1 1.8258 -2.5200 4.0079 12 7 2.0196 -0.6926 -1.1993 13 6 2.6584 0.2500 -2.1276 14 6 4.0025 0.7705 -1.6145 15 6 5.2410 0.4899 -2.4678 16 6 5.0310 -0.2639 -1.1531 17 6 1.7165 1.3599 -2.6234 18 6 2.3704 1.1892 -4.0048 19 6 2.7058 -0.2506 -3.5810 20 1 -0.3634 -1.0277 -0.0041 21 1 -0.3633 0.5102 0.8921 22 1 -0.3634 0.5174 -0.8879 23 1 0.7089 1.1615 3.4843 24 1 1.2747 -1.1990 -1.6540 25 1 3.9653 1.7179 -1.0769 26 1 5.0984 -0.0658 -3.3946 27 1 6.0191 1.2529 -2.4917 28 1 5.6709 0.0031 -0.3120 29 1 4.7500 -1.3152 -1.2146 30 1 1.9077 2.3310 -2.1669 31 1 0.6628 1.0822 -2.6019 32 1 1.6637 1.2472 -4.8327 33 1 3.2493 1.8169 -4.1525 34 1 1.9228 -0.9699 -3.8208 35 1 3.6956 -0.5795 -3.8974 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717893970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:20 Heat of formation + Delta-G solvation = 47.610370 kcal Electronic energy + Delta-G solvation = -14544.889317 eV Core-core repulsion = 12351.378321 eV Total energy + Delta-G solvation = -2193.510996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68156 -35.15834 -34.46026 -31.69853 -27.96906 -25.47011 -25.01619 -23.83580 -21.72030 -21.40843 -19.91958 -17.64594 -16.14524 -15.68488 -15.17167 -14.68805 -14.46693 -13.24608 -12.95277 -12.64894 -12.07270 -11.83051 -11.67230 -11.23134 -11.10621 -10.97558 -10.82127 -10.67718 -10.27681 -10.16361 -10.03321 -9.90041 -9.76669 -9.57233 -9.16579 -8.92727 -8.26016 -7.06498 -5.87793 -3.89523 3.39169 3.42851 3.46512 4.37008 4.53039 4.94946 5.11430 5.13892 5.25867 5.28746 5.42756 5.50280 5.77638 5.86844 6.02219 6.07372 6.10891 6.19449 6.30618 6.43711 6.51927 6.62509 6.68663 6.77866 6.82854 6.93607 6.96311 7.16272 7.50858 7.81363 8.02191 8.41189 8.66223 8.77180 9.17652 9.74716 11.18565 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037269 B = 0.010379 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.104570 B = 2697.106422 C = 3148.693598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.218 3.782 3 H 0.026 0.974 4 C -0.481 4.481 5 H 0.060 0.940 6 C 0.051 3.949 7 N -0.902 5.902 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.291 1.291 11 H -0.279 1.279 12 N -0.671 5.671 13 C 0.138 3.862 14 C -0.106 4.106 15 C -0.200 4.200 16 C -0.145 4.145 17 C -0.166 4.166 18 C -0.138 4.138 19 C -0.142 4.142 20 H 0.028 0.972 21 H 0.088 0.912 22 H 0.005 0.995 23 H 0.258 0.742 24 H 0.321 0.679 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 0.286 -10.278 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.111 3.889 3 H 0.044 0.956 4 C -0.521 4.521 5 H 0.079 0.921 6 C -0.148 4.148 7 N -0.542 5.542 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.205 1.205 12 N -0.299 5.299 13 C 0.045 3.955 14 C -0.125 4.125 15 C -0.237 4.237 16 C -0.182 4.182 17 C -0.206 4.206 18 C -0.175 4.175 19 C -0.180 4.180 20 H 0.047 0.953 21 H 0.107 0.893 22 H 0.024 0.976 23 H 0.067 0.933 24 H 0.139 0.861 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.273 0.192 -9.805 10.698 hybrid contribution -0.620 0.146 0.643 0.906 sum 3.653 0.338 -9.162 9.869 Atomic orbital electron populations 1.22371 1.00216 0.99105 1.00438 1.19049 0.89660 0.93676 0.86491 0.95612 1.21221 1.29397 1.11894 0.89547 0.92135 1.24956 0.95670 0.95302 0.98892 1.69872 1.37826 1.23399 1.23135 0.86642 0.79106 0.79661 0.82412 1.20454 1.21642 1.20506 1.60546 1.34618 1.27438 1.07316 1.21508 0.92674 0.91212 0.90101 1.21631 0.88481 0.99863 1.02536 1.23171 1.00140 1.04269 0.96083 1.22636 1.01319 0.98571 0.95709 1.23672 0.99574 1.00887 0.96470 1.22704 1.00399 0.97395 0.97049 1.23290 1.01651 0.96371 0.96670 0.95273 0.89334 0.97634 0.93258 0.86137 0.88521 0.88789 0.89870 0.89754 0.88254 0.91973 0.90493 0.92362 0.90442 0.90622 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.81 37.16 0.33 -3.60 16 2 C 0.22 5.44 2.05 -68.87 -0.14 5.30 16 3 H 0.03 0.71 6.92 -51.93 -0.36 0.35 16 4 C -0.48 -13.37 8.84 -34.44 -0.30 -13.68 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.05 1.44 5.30 -17.82 -0.09 1.34 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.67 -14.12 6.15 -93.43 -0.57 -14.70 16 13 C 0.14 2.46 0.84 -130.79 -0.11 2.36 16 14 C -0.11 -1.91 4.72 -90.63 -0.43 -2.34 16 15 C -0.20 -2.93 9.71 -26.73 -0.26 -3.19 16 16 C -0.15 -2.54 10.08 -26.73 -0.27 -2.81 16 17 C -0.17 -2.82 6.48 -25.92 -0.17 -2.99 16 18 C -0.14 -1.92 7.77 -25.92 -0.20 -2.12 16 19 C -0.14 -2.11 7.04 -25.91 -0.18 -2.29 16 20 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 22 H 0.00 0.10 6.90 -51.93 -0.36 -0.25 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.32 6.42 7.85 -39.29 -0.31 6.11 16 25 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 26 H 0.09 1.28 5.58 -51.93 -0.29 0.99 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 30 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.08 1.35 6.93 -51.93 -0.36 0.99 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 35 H 0.07 0.99 5.41 -51.93 -0.28 0.71 16 LS Contribution 274.79 15.07 4.14 4.14 Total: -1.00 -28.17 274.79 -8.27 -36.44 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.61 Total: 6.74 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -1.83 Total: -24.02 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.05 Total: -40.17 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.17 -8.27 -36.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717893970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.052 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds