Wall clock time and date at job start Mon Mar 30 2020 02:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47236 * 119.99523 * 2 1 3 5 5 H 1.08006 * 120.00215 * 119.99405 * 4 2 1 6 6 C 1.37880 * 120.00194 * 300.00174 * 4 2 1 7 7 N 1.31516 * 119.99845 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46904 * 59.99951 * 8 6 4 10 10 H 1.48503 * 109.46854 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47099 * 299.99899 * 8 6 4 12 12 N 1.46897 * 109.47089 * 239.99440 * 2 1 3 13 13 C 1.46906 * 110.99829 * 110.99455 * 12 2 1 14 14 C 1.52997 * 112.85007 * 70.96802 * 13 12 2 15 15 C 1.52998 * 117.49939 * 119.89979 * 14 13 12 16 16 C 1.52993 * 117.50057 * 51.27467 * 14 13 12 17 17 C 1.53780 * 113.60936 * 299.76964 * 13 12 2 18 18 C 1.53783 * 87.07916 * 219.93304 * 17 13 12 19 19 C 1.53784 * 87.08147 * 25.43792 * 18 17 13 20 20 H 1.09007 * 109.47253 * 179.76989 * 1 2 3 21 21 H 1.09000 * 109.47186 * 299.76658 * 1 2 3 22 22 H 1.09001 * 109.47430 * 59.77213 * 1 2 3 23 23 H 0.96991 * 119.99705 * 179.97438 * 7 6 4 24 24 H 1.00899 * 111.00391 * 347.04177 * 12 2 1 25 25 H 1.09001 * 115.54531 * 265.60331 * 14 13 12 26 26 H 1.08996 * 117.50169 * 359.97438 * 15 14 13 27 27 H 1.09001 * 117.49938 * 145.02095 * 15 14 13 28 28 H 1.09004 * 117.50158 * 214.97979 * 16 14 13 29 29 H 1.08995 * 117.50071 * 359.97438 * 16 14 13 30 30 H 1.08998 * 113.61447 * 105.39080 * 17 13 12 31 31 H 1.08991 * 113.69556 * 334.49159 * 17 13 12 32 32 H 1.09007 * 113.61372 * 139.98011 * 18 17 13 33 33 H 1.08999 * 113.61780 * 270.88331 * 18 17 13 34 34 H 1.08993 * 113.61910 * 89.11167 * 19 18 17 35 35 H 1.09001 * 113.61172 * 220.02265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3214 -1.1201 4.0081 9 1 3.8064 -1.1206 4.0082 10 1 1.8259 -0.4202 5.2205 11 1 1.8258 -2.5200 4.0079 12 7 2.0196 -0.6926 -1.1993 13 6 2.6584 0.2500 -2.1276 14 6 4.0025 0.7705 -1.6145 15 6 5.2410 0.4899 -2.4678 16 6 5.0310 -0.2639 -1.1531 17 6 1.7165 1.3599 -2.6234 18 6 2.3704 1.1892 -4.0048 19 6 2.7058 -0.2506 -3.5810 20 1 -0.3634 -1.0277 -0.0041 21 1 -0.3633 0.5102 0.8921 22 1 -0.3634 0.5174 -0.8879 23 1 0.7089 1.1615 3.4843 24 1 1.2747 -1.1990 -1.6540 25 1 3.9653 1.7179 -1.0769 26 1 5.0984 -0.0658 -3.3946 27 1 6.0191 1.2529 -2.4917 28 1 5.6709 0.0031 -0.3120 29 1 4.7500 -1.3152 -1.2146 30 1 1.9077 2.3310 -2.1669 31 1 0.6628 1.0822 -2.6019 32 1 1.6637 1.2472 -4.8327 33 1 3.2493 1.8169 -4.1525 34 1 1.9228 -0.9699 -3.8208 35 1 3.6956 -0.5795 -3.8974 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717893970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:20 Heat of formation + Delta-G solvation = 31.014044 kcal Electronic energy + Delta-G solvation = -14545.608987 eV Core-core repulsion = 12351.378321 eV Total energy + Delta-G solvation = -2194.230666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04557 -36.75057 -36.08466 -33.68892 -29.77590 -27.19222 -26.71277 -25.24880 -23.02896 -22.88661 -21.67984 -19.02740 -18.24473 -17.03960 -16.65904 -16.60416 -15.91954 -14.98867 -14.64413 -14.26593 -13.63198 -13.33702 -13.18615 -13.05125 -12.79786 -12.64882 -12.40984 -12.22800 -12.14344 -11.92541 -11.65047 -11.40875 -11.15365 -11.12391 -10.75603 -10.58014 -10.41915 -8.78155 -8.02126 -6.12023 1.41930 1.43280 1.50843 2.46257 3.03383 3.24088 3.57767 3.82155 3.86245 3.94327 4.02026 4.21646 4.41580 4.62251 4.70446 4.77651 4.83229 4.86265 4.93952 5.00562 5.08479 5.12431 5.18309 5.18524 5.33674 5.42487 5.46403 5.56054 5.63367 5.76005 5.91356 6.39427 6.78212 7.00069 7.04203 7.57076 9.01353 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037269 B = 0.010379 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.104570 B = 2697.106422 C = 3148.693598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.230 3.770 3 H -0.007 1.007 4 C -0.497 4.497 5 H 0.050 0.950 6 C 0.004 3.996 7 N -0.926 5.926 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.675 5.675 13 C 0.122 3.878 14 C -0.132 4.132 15 C -0.156 4.156 16 C -0.163 4.163 17 C -0.173 4.173 18 C -0.118 4.118 19 C -0.130 4.130 20 H 0.031 0.969 21 H 0.059 0.941 22 H 0.026 0.974 23 H 0.257 0.743 24 H 0.327 0.673 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -0.295 -11.969 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.122 3.878 3 H 0.011 0.989 4 C -0.536 4.536 5 H 0.068 0.932 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.304 5.304 13 C 0.030 3.970 14 C -0.151 4.151 15 C -0.192 4.192 16 C -0.201 4.201 17 C -0.213 4.213 18 C -0.156 4.156 19 C -0.168 4.168 20 H 0.050 0.950 21 H 0.078 0.922 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.145 0.855 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.100 -0.394 -11.516 12.601 hybrid contribution -0.871 0.351 1.166 1.497 sum 4.229 -0.043 -10.351 11.181 Atomic orbital electron populations 1.22193 0.99780 0.99043 0.99979 1.18708 0.89785 0.91760 0.87527 0.98950 1.21506 1.29306 1.11693 0.91088 0.93211 1.25681 0.95910 0.96003 1.01672 1.70006 1.38660 1.24490 1.23601 0.85700 0.78589 0.78757 0.79068 1.20107 1.21219 1.19848 1.60412 1.34478 1.28212 1.07254 1.21750 0.92521 0.91509 0.91199 1.21618 0.89822 0.98950 1.04679 1.23242 0.97814 1.03048 0.95122 1.22590 1.01759 0.97880 0.97828 1.23658 0.99119 0.99561 0.98970 1.22636 1.00817 0.96599 0.95499 1.23250 1.02896 0.97162 0.93452 0.94991 0.92248 0.95525 0.93357 0.85493 0.91055 0.86673 0.87795 0.90450 0.89469 0.93747 0.91311 0.90179 0.89247 0.89855 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.40 8.81 71.98 0.63 -6.77 16 2 C 0.23 11.73 2.05 44.17 0.09 11.82 16 3 H -0.01 -0.42 6.92 -2.39 -0.02 -0.44 16 4 C -0.50 -28.14 8.84 25.60 0.23 -27.92 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.00 0.25 5.30 84.66 0.45 0.70 16 7 N -0.93 -54.80 11.32 21.45 0.24 -54.55 16 8 Si 0.95 45.34 29.54 68.60 2.03 47.36 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.67 -28.39 6.15 -449.51 -2.77 -31.15 16 13 C 0.12 4.27 0.84 4.05 0.00 4.27 16 14 C -0.13 -4.68 4.72 -10.80 -0.05 -4.73 16 15 C -0.16 -4.14 9.71 30.59 0.30 -3.84 16 16 C -0.16 -5.63 10.08 30.59 0.31 -5.33 16 17 C -0.17 -5.75 6.48 31.12 0.20 -5.55 16 18 C -0.12 -2.90 7.77 31.12 0.24 -2.65 16 19 C -0.13 -3.44 7.04 31.12 0.22 -3.22 16 20 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 21 H 0.06 3.27 6.06 -2.39 -0.01 3.26 16 22 H 0.03 1.14 6.90 -2.39 -0.02 1.13 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.33 12.85 7.85 -89.69 -0.70 12.15 16 25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.12 2.61 5.58 -2.39 -0.01 2.59 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 29 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.07 2.36 6.93 -2.39 -0.02 2.34 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.11 7.94 -2.39 -0.02 2.09 16 35 H 0.09 2.05 5.41 -2.39 -0.01 2.03 16 Total: -1.00 -61.26 274.79 2.48 -58.78 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.36 Total: 22.78 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 2.62 Total: -43.22 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.52 Total: -85.71 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -61.26 2.48 -58.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717893970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.796 kcal (2) G-P(sol) polarization free energy of solvation -61.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds