Wall clock time and date at job start Mon Mar 30 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46502 * 2 1 4 4 C 1.52998 * 109.47499 * 120.00032 * 2 1 3 5 5 C 1.50704 * 109.47041 * 185.00663 * 4 2 1 6 6 H 1.07996 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00274 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46840 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47197 * 119.99872 * 9 7 5 12 12 H 1.48499 * 109.47459 * 239.99953 * 9 7 5 13 13 N 1.46899 * 109.47170 * 240.00382 * 2 1 3 14 14 C 1.46905 * 110.99886 * 84.99640 * 13 2 1 15 15 H 1.09002 * 115.55895 * 350.58105 * 14 13 2 16 16 C 1.53124 * 117.51243 * 136.31780 * 14 13 2 17 17 C 1.52463 * 117.51185 * 204.84649 * 14 13 2 18 18 C 1.53253 * 128.58661 * 134.90743 * 17 14 13 19 19 C 1.53884 * 86.88536 * 194.88792 * 18 17 14 20 20 C 1.53255 * 128.58200 * 10.10804 * 17 14 13 21 21 H 1.08995 * 109.47869 * 60.00107 * 1 2 3 22 22 H 1.09008 * 109.46873 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47668 * 299.99328 * 1 2 3 24 24 H 1.09004 * 109.46839 * 305.00440 * 4 2 1 25 25 H 1.08995 * 109.47187 * 65.00457 * 4 2 1 26 26 H 0.97006 * 119.99431 * 180.02562 * 8 7 5 27 27 H 1.00895 * 111.00253 * 321.04033 * 13 2 1 28 28 H 1.09004 * 117.51267 * 214.93560 * 16 14 13 29 29 H 1.09004 * 117.51324 * 0.03981 * 16 14 13 30 30 H 1.09000 * 113.64538 * 309.38960 * 18 17 14 31 31 H 1.09011 * 113.64293 * 80.38953 * 18 17 14 32 32 H 1.08996 * 113.59311 * 270.39425 * 19 18 17 33 33 H 1.09002 * 113.66108 * 139.58400 * 19 18 17 34 34 H 1.08999 * 113.65298 * 279.60951 * 20 17 14 35 35 H 1.09002 * 113.64586 * 50.53183 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6147 1.3127 6 1 4.0790 -0.0859 0.5392 7 6 4.2306 -1.1933 2.3577 8 7 3.5766 -1.8377 3.2994 9 14 6.0922 -1.0619 2.4361 10 1 6.5838 -0.2923 1.2650 11 1 6.4872 -0.3664 3.6873 12 1 6.6858 -2.4230 2.4178 13 7 2.0196 -0.6924 -1.1995 14 6 2.0823 0.2228 -2.3469 15 1 1.6208 1.1986 -2.1959 16 6 3.3281 0.1593 -3.2351 17 6 1.9968 -0.3886 -3.7409 18 6 1.1640 0.0780 -4.9399 19 6 1.4476 -1.2989 -5.5658 20 6 1.6426 -1.8271 -4.1336 21 1 -0.3635 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.6054 -0.2617 2.1369 25 1 1.7518 -1.7715 1.2055 26 1 4.0611 -2.2444 4.0348 27 1 1.4496 -1.4978 -1.4101 28 1 3.6858 1.0934 -3.6682 29 1 4.1005 -0.5620 -2.9682 30 1 0.1126 0.2429 -4.7042 31 1 1.6120 0.9076 -5.4869 32 1 2.3557 -1.3256 -6.1680 33 1 0.5882 -1.7323 -6.0774 34 1 2.4741 -2.5248 -4.0344 35 1 0.7252 -2.1929 -3.6724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721170759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:06 Heat of formation + Delta-G solvation = 34.817191 kcal Electronic energy + Delta-G solvation = -13840.133731 eV Core-core repulsion = 11646.067982 eV Total energy + Delta-G solvation = -2194.065749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35650 -36.20546 -33.32468 -32.07064 -28.43575 -27.17674 -25.57640 -23.06284 -22.89319 -20.78722 -19.71489 -18.05845 -16.19609 -15.46795 -15.23107 -15.11295 -14.32219 -13.57424 -13.00984 -12.85357 -12.35041 -12.04957 -11.95021 -11.72221 -11.45154 -11.35688 -11.25467 -10.97811 -10.60117 -10.42259 -10.14413 -10.01603 -9.97304 -9.38543 -9.14013 -8.89027 -8.21543 -7.41376 -5.83689 -3.80763 3.41223 3.48345 3.54225 4.04761 4.42758 4.60865 4.76131 4.87052 4.96676 5.11019 5.34532 5.53388 5.68787 5.72056 5.76593 5.78533 5.82227 5.90031 6.00544 6.05757 6.13269 6.17399 6.41040 6.41630 6.46741 6.56499 6.65975 7.07359 7.63255 7.74252 8.08268 8.11559 8.22414 8.65299 9.25215 9.80389 11.28608 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036405 B = 0.007645 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.932453 B = 3661.462250 C = 4099.576092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.032 3.968 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.631 5.631 14 C 0.046 3.954 15 H 0.090 0.910 16 C -0.141 4.141 17 C -0.179 4.179 18 C -0.101 4.101 19 C -0.136 4.136 20 C -0.097 4.097 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.016 0.984 26 H 0.256 0.744 27 H 0.333 0.667 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 2.791 -14.471 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.260 5.260 14 C -0.065 4.065 15 H 0.108 0.892 16 C -0.179 4.179 17 C -0.180 4.180 18 C -0.138 4.138 19 C -0.173 4.173 20 C -0.134 4.134 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.153 0.847 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.660 2.768 -14.124 15.128 hybrid contribution 0.137 0.099 -0.028 0.171 sum -4.523 2.867 -14.152 15.131 Atomic orbital electron populations 1.22587 0.99503 1.01154 1.00589 1.21872 0.89846 0.98171 0.92011 0.91660 1.19124 0.96326 0.95370 0.89717 1.21208 0.91896 1.32565 1.06715 0.92226 1.25016 0.97997 0.95988 0.96084 1.69985 1.35041 1.37215 1.12433 0.86575 0.86523 0.77524 0.77584 1.19835 1.21441 1.21351 1.60237 1.56763 1.07723 1.01242 1.22337 1.00700 0.96720 0.86746 0.89246 1.23038 0.91167 1.01706 1.01991 1.22665 1.02185 0.97085 0.96108 1.22440 0.99161 0.96994 0.95242 1.22711 1.01304 0.96898 0.96389 1.22319 1.01356 0.94532 0.95225 0.94407 0.93105 0.92511 0.96398 0.96541 0.93455 0.84748 0.89416 0.88087 0.90346 0.91877 0.90378 0.91832 0.91301 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.16 37.16 0.34 -2.74 16 2 C 0.09 1.86 2.43 -67.72 -0.16 1.70 16 3 H 0.07 1.38 7.74 -51.93 -0.40 0.98 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.49 -13.96 8.84 -34.44 -0.30 -14.26 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.89 13.29 55.43 0.74 -27.15 16 9 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.63 -12.14 6.21 -99.96 -0.62 -12.76 16 14 C 0.05 0.75 5.96 -67.92 -0.40 0.35 16 15 H 0.09 1.43 7.77 -51.93 -0.40 1.02 16 16 C -0.14 -2.15 10.47 -26.88 -0.28 -2.43 16 17 C -0.18 -2.46 2.99 -154.73 -0.46 -2.92 16 18 C -0.10 -1.14 8.10 -26.14 -0.21 -1.35 16 19 C -0.14 -1.44 8.08 -25.81 -0.21 -1.64 16 20 C -0.10 -1.22 7.60 -26.13 -0.20 -1.42 16 21 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 22 H 0.05 0.85 8.13 -51.92 -0.42 0.43 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.33 6.07 7.98 -39.29 -0.31 5.76 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -30.28 289.39 -8.82 -39.10 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.15 Total: 1.65 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.12 Total: -22.70 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.12 Total: -39.91 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.28 -8.82 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721170759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.916 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds