Wall clock time and date at job start Mon Mar 30 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46502 * 2 1 4 4 C 1.52998 * 109.47499 * 120.00032 * 2 1 3 5 5 C 1.50704 * 109.47041 * 185.00663 * 4 2 1 6 6 H 1.07996 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00274 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46840 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47197 * 119.99872 * 9 7 5 12 12 H 1.48499 * 109.47459 * 239.99953 * 9 7 5 13 13 N 1.46899 * 109.47170 * 240.00382 * 2 1 3 14 14 C 1.46905 * 110.99886 * 84.99640 * 13 2 1 15 15 H 1.09002 * 115.55895 * 350.58105 * 14 13 2 16 16 C 1.53124 * 117.51243 * 136.31780 * 14 13 2 17 17 C 1.52463 * 117.51185 * 204.84649 * 14 13 2 18 18 C 1.53253 * 128.58661 * 134.90743 * 17 14 13 19 19 C 1.53884 * 86.88536 * 194.88792 * 18 17 14 20 20 C 1.53255 * 128.58200 * 10.10804 * 17 14 13 21 21 H 1.08995 * 109.47869 * 60.00107 * 1 2 3 22 22 H 1.09008 * 109.46873 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47668 * 299.99328 * 1 2 3 24 24 H 1.09004 * 109.46839 * 305.00440 * 4 2 1 25 25 H 1.08995 * 109.47187 * 65.00457 * 4 2 1 26 26 H 0.97006 * 119.99431 * 180.02562 * 8 7 5 27 27 H 1.00895 * 111.00253 * 321.04033 * 13 2 1 28 28 H 1.09004 * 117.51267 * 214.93560 * 16 14 13 29 29 H 1.09004 * 117.51324 * 0.03981 * 16 14 13 30 30 H 1.09000 * 113.64538 * 309.38960 * 18 17 14 31 31 H 1.09011 * 113.64293 * 80.38953 * 18 17 14 32 32 H 1.08996 * 113.59311 * 270.39425 * 19 18 17 33 33 H 1.09002 * 113.66108 * 139.58400 * 19 18 17 34 34 H 1.08999 * 113.65298 * 279.60951 * 20 17 14 35 35 H 1.09002 * 113.64586 * 50.53183 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6147 1.3127 6 1 4.0790 -0.0859 0.5392 7 6 4.2306 -1.1933 2.3577 8 7 3.5766 -1.8377 3.2994 9 14 6.0922 -1.0619 2.4361 10 1 6.5838 -0.2923 1.2650 11 1 6.4872 -0.3664 3.6873 12 1 6.6858 -2.4230 2.4178 13 7 2.0196 -0.6924 -1.1995 14 6 2.0823 0.2228 -2.3469 15 1 1.6208 1.1986 -2.1959 16 6 3.3281 0.1593 -3.2351 17 6 1.9968 -0.3886 -3.7409 18 6 1.1640 0.0780 -4.9399 19 6 1.4476 -1.2989 -5.5658 20 6 1.6426 -1.8271 -4.1336 21 1 -0.3635 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.6054 -0.2617 2.1369 25 1 1.7518 -1.7715 1.2055 26 1 4.0611 -2.2444 4.0348 27 1 1.4496 -1.4978 -1.4101 28 1 3.6858 1.0934 -3.6682 29 1 4.1005 -0.5620 -2.9682 30 1 0.1126 0.2429 -4.7042 31 1 1.6120 0.9076 -5.4869 32 1 2.3557 -1.3256 -6.1680 33 1 0.5882 -1.7323 -6.0774 34 1 2.4741 -2.5248 -4.0344 35 1 0.7252 -2.1929 -3.6724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721170759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:06 Heat of formation + Delta-G solvation = 16.777232 kcal Electronic energy + Delta-G solvation = -13840.916002 eV Core-core repulsion = 11646.067982 eV Total energy + Delta-G solvation = -2194.848021 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45969 -37.72975 -34.99792 -33.84938 -30.13209 -28.96041 -26.51405 -25.10079 -23.86324 -22.10240 -21.42480 -19.12412 -18.36930 -16.86500 -16.66651 -16.22565 -16.04535 -15.07797 -14.66447 -14.38001 -13.76742 -13.43641 -13.25492 -13.23834 -13.06694 -12.78573 -12.52179 -12.39279 -12.32751 -12.22794 -11.90564 -11.28975 -11.19840 -11.08659 -10.87786 -10.51127 -10.43269 -8.85580 -8.10358 -6.14984 1.39962 1.40838 1.54243 2.47012 2.89682 3.13363 3.26313 3.76614 3.80322 3.97559 4.05297 4.23904 4.26985 4.41461 4.55388 4.62631 4.71685 4.87217 4.88333 4.93238 4.96528 5.10343 5.10970 5.21215 5.24827 5.29079 5.48238 5.50521 5.53944 5.69273 5.89633 6.35428 6.52992 6.71293 6.99128 7.50558 9.02084 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036405 B = 0.007645 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.932453 B = 3661.462250 C = 4099.576092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 H 0.058 0.942 4 C 0.036 3.964 5 C -0.497 4.497 6 H 0.054 0.946 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.649 5.649 14 C 0.027 3.973 15 H 0.095 0.905 16 C -0.149 4.149 17 C -0.166 4.166 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.106 4.106 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.057 0.943 24 H -0.006 1.006 25 H -0.010 1.010 26 H 0.259 0.741 27 H 0.336 0.664 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 3.424 -16.412 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.008 4.008 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.536 4.536 6 H 0.073 0.927 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.279 5.279 14 C -0.084 4.084 15 H 0.113 0.887 16 C -0.188 4.188 17 C -0.167 4.167 18 C -0.131 4.131 19 C -0.161 4.161 20 C -0.143 4.143 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.012 0.988 25 H 0.008 0.992 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.774 3.410 -16.083 17.120 hybrid contribution 0.167 -0.118 0.570 0.606 sum -4.606 3.292 -15.513 16.514 Atomic orbital electron populations 1.22425 0.96565 1.01718 1.01939 1.21514 0.92138 0.96728 0.90455 0.92386 1.19010 0.95196 0.94165 0.91736 1.21509 0.93409 1.32183 1.06449 0.92750 1.25882 1.03019 0.95694 0.95779 1.70108 1.37015 1.38148 1.13114 0.85500 0.80538 0.77675 0.77907 1.19129 1.20579 1.20865 1.60048 1.57234 1.08596 1.02000 1.22339 1.02209 0.96766 0.87046 0.88697 1.23035 0.91077 1.02241 1.02403 1.22832 1.00697 0.98254 0.94936 1.22492 0.99249 0.97789 0.93561 1.22678 1.02361 0.96008 0.95099 1.22442 1.01141 0.93666 0.97077 0.91704 0.92947 0.92424 0.98779 0.99171 0.93260 0.84481 0.87702 0.90261 0.89263 0.90739 0.89873 0.89930 0.92475 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 9.16 71.98 0.66 -4.92 16 2 C 0.10 4.20 2.43 44.91 0.11 4.31 16 3 H 0.06 2.47 7.74 -2.39 -0.02 2.45 16 4 C 0.04 1.95 4.65 29.85 0.14 2.09 16 5 C -0.50 -29.17 8.84 25.60 0.23 -28.94 16 6 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 7 C -0.01 -0.49 5.46 84.65 0.46 -0.02 16 8 N -0.94 -59.09 13.29 21.45 0.28 -58.81 16 9 Si 0.96 46.65 29.54 68.60 2.03 48.68 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 13 N -0.65 -24.98 6.21 -470.17 -2.92 -27.90 16 14 C 0.03 0.85 5.96 44.78 0.27 1.12 16 15 H 0.10 2.88 7.77 -2.39 -0.02 2.86 16 16 C -0.15 -4.43 10.47 30.50 0.32 -4.11 16 17 C -0.17 -4.24 2.99 -52.33 -0.16 -4.40 16 18 C -0.09 -1.79 8.10 30.98 0.25 -1.54 16 19 C -0.12 -2.23 8.08 31.19 0.25 -1.97 16 20 C -0.11 -2.47 7.60 30.98 0.24 -2.24 16 21 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 22 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 23 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 24 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 27 H 0.34 12.23 7.98 -89.70 -0.72 11.51 16 28 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -65.33 289.39 2.48 -62.85 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.32 Total: 15.79 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 2.76 Total: -40.61 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.63 Total: -86.70 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -65.33 2.48 -62.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721170759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.624 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds