Wall clock time and date at job start Mon Mar 30 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47691 * 2 1 4 4 C 1.53002 * 109.47360 * 239.99655 * 2 1 3 5 5 C 1.50706 * 109.46925 * 175.00112 * 4 2 1 6 6 H 1.07999 * 120.00196 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99394 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99426 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47555 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.46814 * 210.00053 * 9 7 5 12 12 H 1.48496 * 109.47318 * 329.99545 * 9 7 5 13 13 N 1.46904 * 109.46919 * 119.99605 * 2 1 3 14 14 C 1.46893 * 111.00348 * 275.00031 * 13 2 1 15 15 H 1.09005 * 115.55702 * 350.58569 * 14 13 2 16 16 C 1.53124 * 117.51545 * 136.31632 * 14 13 2 17 17 C 1.52464 * 117.51607 * 204.84734 * 14 13 2 18 18 C 1.53253 * 128.58447 * 134.95147 * 17 14 13 19 19 C 1.53893 * 86.88092 * 194.89009 * 18 17 14 20 20 C 1.53257 * 128.58376 * 10.15336 * 17 14 13 21 21 H 1.09001 * 109.47358 * 299.99980 * 1 2 3 22 22 H 1.09000 * 109.46910 * 60.00423 * 1 2 3 23 23 H 1.09002 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46497 * 55.00376 * 4 2 1 25 25 H 1.09000 * 109.47312 * 295.00155 * 4 2 1 26 26 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99902 * 151.04422 * 13 2 1 28 28 H 1.08995 * 117.51522 * 214.89903 * 16 14 13 29 29 H 1.09002 * 117.51067 * 359.96045 * 16 14 13 30 30 H 1.09000 * 113.64665 * 309.38654 * 18 17 14 31 31 H 1.08998 * 113.64730 * 80.39575 * 18 17 14 32 32 H 1.09003 * 113.58777 * 270.39039 * 19 18 17 33 33 H 1.09003 * 113.66082 * 139.58851 * 19 18 17 34 34 H 1.08998 * 113.64465 * 279.61062 * 20 17 14 35 35 H 1.08996 * 113.64480 * 50.52157 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8371 -3.2999 9 14 6.0921 -1.0615 -2.4364 10 1 6.7000 -2.2147 -1.7253 11 1 6.5296 -1.0686 -3.8555 12 1 6.5268 0.2031 -1.7908 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.9231 1.2763 2.1174 16 6 1.5661 -0.2940 3.6928 17 6 3.0641 -0.1144 3.4637 18 6 4.0376 0.8172 4.1938 19 6 4.7331 -0.4539 4.7124 20 6 4.1680 -1.1774 3.4775 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2618 -2.1369 25 1 1.7517 -1.7716 -1.2055 26 1 4.0608 -2.2439 -4.0352 27 1 2.9172 -1.1205 1.0289 28 1 1.0681 0.4200 4.3487 29 1 1.1794 -1.3125 3.7264 30 1 4.6581 1.4128 3.5242 31 1 3.5692 1.4105 4.9791 32 1 4.3271 -0.8193 5.6558 33 1 5.8210 -0.3859 4.7184 34 1 3.8039 -2.1829 3.6883 35 1 4.8237 -1.1379 2.6077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721170762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:11 Heat of formation + Delta-G solvation = 13.397952 kcal Electronic energy + Delta-G solvation = -13941.521449 eV Core-core repulsion = 11746.526892 eV Total energy + Delta-G solvation = -2194.994557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45118 -37.73128 -35.04378 -33.84587 -30.02198 -29.28301 -26.53828 -25.13077 -23.85777 -22.06697 -21.17613 -19.12673 -18.52883 -16.93976 -16.59254 -16.29245 -16.05849 -15.65576 -14.67950 -14.06249 -13.64219 -13.38481 -13.30790 -13.21076 -12.96492 -12.75443 -12.61100 -12.37221 -12.32872 -12.26028 -12.11633 -11.39187 -11.14834 -11.02711 -10.94901 -10.60490 -10.45701 -9.00765 -8.21102 -6.31771 1.37899 1.38508 1.49036 2.38495 2.88522 3.07955 3.22704 3.76637 3.80187 3.95904 4.04369 4.20641 4.34174 4.54303 4.57910 4.71457 4.74996 4.85150 4.87563 4.94455 4.97849 5.08303 5.09428 5.21136 5.24453 5.32455 5.45973 5.47262 5.54254 5.56564 5.82034 6.19188 6.46499 6.62061 6.82915 7.36904 8.90603 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.009837 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.995481 B = 2845.572803 C = 3733.506873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.098 3.902 3 H 0.024 0.976 4 C 0.026 3.974 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.653 5.653 14 C 0.017 3.983 15 H 0.090 0.910 16 C -0.125 4.125 17 C -0.177 4.177 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.109 4.109 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.048 0.952 24 H -0.003 1.003 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.343 0.657 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 4.363 14.925 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 H 0.042 0.958 4 C -0.011 4.011 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.190 1.190 13 N -0.285 5.285 14 C -0.094 4.094 15 H 0.107 0.893 16 C -0.163 4.163 17 C -0.178 4.178 18 C -0.134 4.134 19 C -0.159 4.159 20 C -0.146 4.146 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.164 0.836 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.564 4.015 14.906 15.447 hybrid contribution 1.499 0.303 -1.011 1.833 sum 0.935 4.318 13.895 14.580 Atomic orbital electron populations 1.21690 0.94380 1.01367 1.00900 1.21483 0.95198 0.94660 0.89856 0.95800 1.19158 0.94957 0.94699 0.92318 1.21482 0.93195 1.34206 1.08271 0.92706 1.25892 1.03395 0.94786 0.95284 1.70093 1.37558 1.36624 1.12704 0.85526 0.79775 0.78868 0.77369 1.19685 1.20856 1.19023 1.60315 1.33118 1.31191 1.03879 1.22448 1.04802 0.94831 0.87337 0.89256 1.23043 0.92730 1.02653 0.97909 1.22840 0.91272 1.00837 1.02853 1.22461 0.96169 0.96040 0.98746 1.22687 1.00196 0.95794 0.97259 1.22394 0.96154 0.97318 0.98753 0.92037 0.92829 0.93313 0.98495 0.98522 0.92781 0.83649 0.86954 0.89029 0.90591 0.89998 0.88858 0.90643 0.91746 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16 2 C 0.10 4.20 2.55 44.91 0.11 4.32 16 3 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 4 C 0.03 1.39 4.57 29.85 0.14 1.53 16 5 C -0.53 -30.06 8.12 25.60 0.21 -29.86 16 6 H 0.05 2.99 7.49 -2.91 -0.02 2.97 16 7 C 0.00 0.27 5.46 84.66 0.46 0.73 16 8 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 9 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.65 -26.06 6.55 -470.18 -3.08 -29.14 16 14 C 0.02 0.54 6.03 44.78 0.27 0.81 16 15 H 0.09 2.91 7.60 -2.38 -0.02 2.89 16 16 C -0.13 -3.31 10.47 30.50 0.32 -2.99 16 17 C -0.18 -4.90 2.99 -52.32 -0.16 -5.06 16 18 C -0.10 -2.20 8.10 30.98 0.25 -1.95 16 19 C -0.12 -2.58 8.08 31.19 0.25 -2.33 16 20 C -0.11 -3.00 7.60 30.98 0.24 -2.77 16 21 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 27 H 0.34 15.10 6.72 -89.69 -0.60 14.50 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -61.71 287.54 2.44 -59.27 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.44 Total: 21.41 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 2.77 Total: -41.47 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.80 Total: -85.54 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.71 2.44 -59.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721170762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.667 kcal (2) G-P(sol) polarization free energy of solvation -61.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds