Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.09000 * 117.49996 * 215.00804 * 5 2 1 7 7 C 1.53002 * 117.49773 * 0.02562 * 5 2 1 8 8 N 1.46896 * 109.47487 * 185.00232 * 7 5 2 9 9 C 1.48538 * 110.99835 * 52.60178 * 8 7 5 10 10 C 1.54938 * 103.22505 * 159.72469 * 9 8 7 11 11 C 1.54596 * 102.92154 * 322.58921 * 10 9 8 12 12 H 1.09005 * 110.30966 * 263.03893 * 11 10 9 13 13 C 1.50698 * 110.31184 * 140.87362 * 11 10 9 14 14 H 1.07997 * 120.00543 * 244.28400 * 13 11 10 15 15 C 1.37888 * 119.99825 * 64.28242 * 13 11 10 16 16 N 1.31513 * 119.99878 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99927 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47095 * 89.99737 * 17 15 13 19 19 H 1.48499 * 109.46728 * 210.00123 * 17 15 13 20 20 H 1.48501 * 109.46899 * 329.99741 * 17 15 13 21 21 C 1.47893 * 111.00462 * 170.00340 * 8 7 5 22 22 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 23 23 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 24 24 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 25 25 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 26 26 H 1.08999 * 117.49959 * 144.99502 * 4 2 1 27 27 H 1.09003 * 109.47265 * 305.00543 * 7 5 2 28 28 H 1.09003 * 109.46925 * 65.00044 * 7 5 2 29 29 H 1.08990 * 110.66819 * 278.15906 * 9 8 7 30 30 H 1.08999 * 110.66161 * 41.29335 * 9 8 7 31 31 H 1.08997 * 110.72376 * 204.23199 * 10 9 8 32 32 H 1.08993 * 110.87829 * 81.01691 * 10 9 8 33 33 H 0.96996 * 120.00165 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.91913 * 333.50847 * 21 8 7 35 35 H 1.09005 * 109.91991 * 94.80092 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 3.1713 -0.8747 1.2690 7 6 1.3588 -2.1560 1.4717 8 7 2.2079 -3.0727 2.2440 9 6 3.1210 -2.3220 3.1434 10 6 3.5208 -3.3780 4.2044 11 6 2.2132 -4.1778 4.4059 12 1 1.6737 -3.8074 5.2777 13 6 2.5165 -5.6456 4.5619 14 1 2.1631 -6.3515 3.8249 15 6 3.2455 -6.0876 5.6458 16 7 3.6755 -5.2281 6.5435 17 14 3.6221 -7.9070 5.8388 18 1 4.9059 -8.2213 5.1620 19 1 3.7288 -8.2399 7.2821 20 1 2.5308 -8.7061 5.2259 21 6 1.3919 -3.9349 3.1261 22 1 -0.3634 -0.9269 -0.4438 23 1 -0.3633 0.0792 1.0246 24 1 -0.3634 0.8478 -0.5809 25 1 1.6112 -1.8584 -1.2685 26 1 3.1713 -0.8746 -1.2689 27 1 0.6671 -1.6482 2.1438 28 1 0.7950 -2.7213 0.7295 29 1 3.9979 -1.9739 2.5978 30 1 2.5999 -1.4861 3.6100 31 1 3.8249 -2.8956 5.1333 32 1 4.3142 -4.0244 3.8294 33 1 4.1886 -5.5389 7.3057 34 1 0.4569 -3.4327 3.3747 35 1 1.1864 -4.8840 2.6310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722875146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = -0.046931 kcal Electronic energy + Delta-G solvation = -13919.026750 eV Core-core repulsion = 11723.449178 eV Total energy + Delta-G solvation = -2195.577571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15171 -38.34164 -35.00012 -32.29826 -30.03479 -29.33896 -27.36504 -25.60834 -22.86622 -21.72577 -21.27659 -19.92212 -18.57958 -17.33234 -16.50188 -16.14527 -15.81424 -15.06606 -14.67959 -14.36081 -13.99117 -13.66997 -13.48184 -13.20485 -12.89667 -12.80718 -12.58732 -12.40113 -12.30925 -11.98045 -11.83044 -11.55856 -11.21631 -10.87200 -10.71070 -10.66818 -10.47482 -9.19921 -8.12886 -6.21641 1.42015 1.42750 1.53109 2.44216 2.82094 3.17679 3.27869 3.73922 3.97984 4.02310 4.15504 4.33782 4.44130 4.48823 4.52491 4.53730 4.73406 4.77326 4.88023 4.97234 4.97329 4.99956 5.05195 5.20619 5.23633 5.34040 5.37667 5.46977 5.55337 5.72452 5.84439 6.16926 6.31182 6.39738 6.86514 7.45046 8.96978 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.069249 B = 0.006352 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.240862 B = 4406.703935 C = 4482.926944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.165 4.165 6 H 0.101 0.899 7 C 0.083 3.917 8 N -0.523 5.523 9 C 0.046 3.954 10 C -0.086 4.086 11 C 0.030 3.970 12 H 0.000 1.000 13 C -0.526 4.526 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.055 3.945 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.031 0.969 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 9.257 -11.547 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 H 0.131 0.869 4 C -0.203 4.203 5 C -0.184 4.184 6 H 0.119 0.881 7 C -0.044 4.044 8 N -0.248 5.248 9 C -0.081 4.081 10 C -0.125 4.125 11 C 0.011 3.989 12 H 0.018 0.982 13 C -0.564 4.564 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.782 3.218 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.563 8.952 -11.773 15.213 hybrid contribution -0.076 -0.548 1.183 1.306 sum -3.638 8.405 -10.590 14.001 Atomic orbital electron populations 1.21363 0.92353 1.02479 1.01813 1.22489 0.95905 0.94355 1.03567 0.86876 1.23189 1.02779 1.01312 0.93037 1.22411 1.01204 0.99818 0.94948 0.88129 1.21818 0.93842 0.92292 0.96485 1.64725 1.17854 1.19153 1.23047 1.23176 0.96632 0.94989 0.93352 1.22186 0.98684 0.95806 0.95813 1.19488 0.92562 0.95250 0.91601 0.98227 1.21518 1.33955 0.93150 1.07796 0.92836 1.25771 0.95676 1.01840 0.95466 1.70087 1.37723 1.35629 1.12665 0.85582 0.78680 0.80447 0.77121 1.20200 1.20855 1.19170 1.22854 0.94292 0.96538 0.93572 0.92595 0.92737 0.90713 0.88674 0.88148 0.95046 0.90771 0.89903 0.94297 0.94187 0.94458 0.93059 0.95062 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 9.19 71.98 0.66 -1.56 16 2 C -0.14 -2.91 6.40 -10.79 -0.07 -2.98 16 3 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.17 -3.56 9.83 30.62 0.30 -3.26 16 5 C -0.17 -4.28 5.60 -10.77 -0.06 -4.34 16 6 H 0.10 2.76 6.15 -2.39 -0.01 2.75 16 7 C 0.08 2.56 4.39 86.30 0.38 2.94 16 8 N -0.52 -20.34 5.40 -883.03 -4.76 -25.10 16 9 C 0.05 1.79 5.35 86.65 0.46 2.26 16 10 C -0.09 -4.22 5.75 31.80 0.18 -4.04 16 11 C 0.03 1.57 2.87 -10.66 -0.03 1.54 16 12 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 13 C -0.53 -29.93 8.37 25.60 0.21 -29.71 16 14 H 0.05 3.00 7.34 -2.91 -0.02 2.98 16 15 C 0.01 0.62 5.34 84.66 0.45 1.08 16 16 N -0.92 -54.66 12.63 21.45 0.27 -54.39 16 17 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 C 0.06 2.41 6.35 86.45 0.55 2.96 16 22 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 23 H 0.05 1.04 7.84 -2.39 -0.02 1.02 16 24 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.09 2.00 7.94 -2.38 -0.02 1.98 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.03 0.97 7.44 -2.39 -0.02 0.95 16 28 H 0.07 2.17 7.88 -2.39 -0.02 2.15 16 29 H 0.08 2.91 7.09 -2.39 -0.02 2.90 16 30 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 31 H 0.04 2.05 8.12 -2.39 -0.02 2.03 16 32 H 0.04 1.96 7.85 -2.39 -0.02 1.94 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 35 H 0.06 2.82 7.39 -2.38 -0.02 2.80 16 Total: -1.00 -61.07 277.73 1.61 -59.46 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.03 Total: 8.55 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.04 Total: -35.13 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -4.49 Total: -79.49 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.07 1.61 -59.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722875146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds