Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.50704 * 109.47262 * 240.00249 * 2 1 3 5 5 H 1.08001 * 119.99412 * 239.99929 * 4 2 1 6 6 C 1.37871 * 120.00052 * 59.99306 * 4 2 1 7 7 N 1.31514 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00093 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46995 * 90.00506 * 8 6 4 10 10 H 1.48502 * 109.47264 * 210.00353 * 8 6 4 11 11 H 1.48502 * 109.46909 * 330.00459 * 8 6 4 12 12 N 1.46901 * 109.47210 * 120.00014 * 2 1 3 13 13 C 1.46902 * 111.00062 * 176.04966 * 12 2 1 14 14 C 1.46902 * 110.99644 * 300.00136 * 12 2 1 15 15 C 1.53006 * 109.46626 * 170.00094 * 14 12 2 16 16 H 1.08995 * 115.55187 * 330.57837 * 15 14 12 17 17 C 1.53005 * 117.49827 * 116.25500 * 15 14 12 18 18 C 1.52998 * 117.49507 * 184.91192 * 15 14 12 19 19 C 1.52989 * 138.58746 * 121.62148 * 18 15 14 20 20 C 1.52988 * 138.58765 * 23.40332 * 18 15 14 21 21 H 1.09003 * 109.47205 * 299.99700 * 1 2 3 22 22 H 1.08996 * 109.47113 * 60.00211 * 1 2 3 23 23 H 1.08997 * 109.47119 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00131 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47140 * 183.95767 * 13 12 2 26 26 H 1.09002 * 109.46408 * 303.95149 * 13 12 2 27 27 H 1.09000 * 109.47025 * 63.94802 * 13 12 2 28 28 H 1.08993 * 109.47737 * 50.00226 * 14 12 2 29 29 H 1.09000 * 109.47263 * 289.99788 * 14 12 2 30 30 H 1.09001 * 117.49803 * 214.97876 * 17 15 14 31 31 H 1.09001 * 117.49926 * 359.96770 * 17 15 14 32 32 H 1.09000 * 117.50041 * 336.59117 * 19 18 15 33 33 H 1.09001 * 117.50038 * 121.61562 * 19 18 15 34 34 H 1.09005 * 117.49473 * 238.38130 * 20 18 15 35 35 H 1.08994 * 117.50354 * 23.37672 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4210 15 6 1.8627 -0.9043 3.6341 16 1 1.8840 -1.9775 3.4448 17 6 2.8401 -0.3506 4.6729 18 6 1.3465 -0.4374 4.9966 19 6 0.4439 -0.9522 6.1195 20 6 0.2403 0.4570 5.5594 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7093 1.1617 -3.4844 25 1 3.8164 -1.3721 2.0499 26 1 3.8069 -1.2915 0.2719 27 1 3.9192 0.2045 1.2300 28 1 0.4722 0.1324 2.3564 29 1 2.0518 0.9346 2.5280 30 1 3.5043 -1.0596 5.1672 31 1 3.2598 0.6389 4.4918 32 1 -0.2981 -1.7081 5.8623 33 1 0.8793 -1.0402 7.1149 34 1 0.5418 1.2962 6.1864 35 1 -0.6354 0.6286 4.9336 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722887427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = 45.695292 kcal Electronic energy + Delta-G solvation = -13904.975533 eV Core-core repulsion = 11711.381494 eV Total energy + Delta-G solvation = -2193.594040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.78120 -38.10409 -34.94762 -33.40162 -31.01206 -28.84225 -26.64483 -25.01852 -23.26652 -22.17594 -21.08706 -19.79439 -18.32253 -17.07135 -16.34311 -16.00658 -15.78968 -15.59327 -14.83763 -14.54088 -14.35351 -13.67753 -13.18017 -12.95222 -12.78379 -12.57682 -12.42487 -12.28607 -12.20474 -12.09273 -11.93199 -11.64888 -11.02082 -10.78065 -10.75803 -10.57947 -10.44856 -8.94953 -8.11454 -6.23652 1.42929 1.43836 1.54149 2.42269 2.75070 2.82042 3.16485 3.29915 3.54875 3.99015 4.02234 4.39876 4.51756 4.57845 4.69764 4.71305 4.74757 4.77466 4.84783 4.85927 4.97540 5.01700 5.03978 5.04913 5.11388 5.26203 5.29433 5.33767 5.49963 5.72174 5.79025 6.24740 6.40002 6.74596 6.91283 7.45648 8.94916 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.059543 B = 0.006801 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.139399 B = 4116.310900 C = 4384.502238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.214 3.786 3 H -0.041 1.041 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.543 5.543 13 C 0.044 3.956 14 C 0.088 3.912 15 C -0.098 4.098 16 H 0.104 0.896 17 C -0.119 4.119 18 C -0.247 4.247 19 C -0.116 4.116 20 C -0.135 4.135 21 H 0.028 0.972 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.003 0.997 28 H 0.065 0.935 29 H 0.014 0.986 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -2.337 13.995 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H -0.023 1.023 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.267 5.267 13 C -0.104 4.104 14 C -0.040 4.040 15 C -0.116 4.116 16 H 0.122 0.878 17 C -0.155 4.155 18 C -0.248 4.248 19 C -0.153 4.153 20 C -0.172 4.172 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.022 0.978 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.053 -2.694 13.846 14.145 hybrid contribution 0.457 0.756 -1.153 1.453 sum 1.510 -1.938 12.693 12.928 Atomic orbital electron populations 1.21667 0.97392 0.99219 0.99604 1.19061 0.92650 0.90108 0.87468 1.02317 1.21441 1.31161 1.12324 0.90877 0.92059 1.25756 0.95363 0.95765 1.02036 1.70029 1.37878 1.24241 1.24083 0.85478 0.78891 0.78170 0.78620 1.20094 1.20942 1.19169 1.62063 1.10462 1.52295 1.01887 1.22171 0.87663 0.98656 1.01920 1.21608 0.99709 0.93648 0.89079 1.21913 1.03093 0.99255 0.87367 0.87791 1.22862 0.89763 1.02183 1.00710 1.21719 0.95580 1.09173 0.98308 1.22748 0.99612 0.96751 0.96173 1.22716 0.97640 0.94671 1.02135 0.95328 0.92071 0.94986 0.92921 0.90566 0.92297 0.97845 0.91693 0.96765 0.87156 0.89167 0.88388 0.86938 0.87541 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.76 71.98 0.63 -5.53 16 2 C 0.21 11.36 2.06 44.17 0.09 11.45 16 3 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 4 C -0.52 -29.27 7.88 25.60 0.20 -29.07 16 5 H 0.06 3.41 6.41 -2.91 -0.02 3.39 16 6 C 0.01 0.52 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.11 11.32 21.44 0.24 -53.87 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 N -0.54 -24.26 4.62 -901.46 -4.17 -28.43 16 13 C 0.04 1.79 9.10 127.69 1.16 2.95 16 14 C 0.09 3.35 5.05 86.31 0.44 3.79 16 15 C -0.10 -3.01 4.80 -10.79 -0.05 -3.06 16 16 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 17 C -0.12 -2.98 10.18 30.62 0.31 -2.67 16 18 C -0.25 -6.34 5.40 -52.17 -0.28 -6.62 16 19 C -0.12 -2.33 10.53 30.59 0.32 -2.01 16 20 C -0.13 -2.99 10.53 30.59 0.32 -2.66 16 21 H 0.03 1.29 6.20 -2.39 -0.01 1.28 16 22 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 23 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.08 2.57 7.28 -2.39 -0.02 2.55 16 26 H 0.06 2.55 6.10 -2.39 -0.01 2.54 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.06 2.58 5.83 -2.39 -0.01 2.57 16 29 H 0.01 0.56 7.86 -2.39 -0.02 0.54 16 30 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.28 8.03 -2.39 -0.02 2.26 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -61.25 281.75 2.74 -58.51 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.04 Total: 10.08 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.59 Total: -32.48 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -3.93 Total: -82.30 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -61.25 2.74 -58.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.203 kcal (2) G-P(sol) polarization free energy of solvation -61.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds