Wall clock time and date at job start Mon Mar 30 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47442 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99940 * 2 1 3 5 5 H 1.08007 * 120.00122 * 240.00451 * 4 2 1 6 6 C 1.37877 * 119.99906 * 60.00055 * 4 2 1 7 7 N 1.31511 * 120.00073 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99692 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47223 * 60.00139 * 8 6 4 10 10 H 1.48505 * 109.46676 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47301 * 299.99714 * 8 6 4 12 12 N 1.46905 * 109.47034 * 119.99935 * 2 1 3 13 13 C 1.46898 * 110.99974 * 58.95273 * 12 2 1 14 14 C 1.46904 * 110.99974 * 294.99823 * 12 2 1 15 15 C 1.52996 * 109.47038 * 189.99797 * 14 12 2 16 16 H 1.09002 * 115.54951 * 29.41963 * 15 14 12 17 17 C 1.53005 * 117.49831 * 243.74540 * 15 14 12 18 18 C 1.52995 * 117.49653 * 175.08881 * 15 14 12 19 19 C 1.52999 * 138.58973 * 336.62192 * 18 15 14 20 20 C 1.52992 * 138.58961 * 238.40292 * 18 15 14 21 21 H 1.08998 * 109.46420 * 59.99789 * 1 2 3 22 22 H 1.08992 * 109.46860 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46731 * 300.00093 * 1 2 3 24 24 H 0.96997 * 120.00025 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47232 * 296.04947 * 13 12 2 26 26 H 1.08999 * 109.47363 * 56.04659 * 13 12 2 27 27 H 1.09002 * 109.47421 * 176.04586 * 13 12 2 28 28 H 1.09004 * 109.46889 * 70.00029 * 14 12 2 29 29 H 1.09000 * 109.47249 * 309.99994 * 14 12 2 30 30 H 1.09000 * 117.49916 * 359.97438 * 17 15 14 31 31 H 1.08994 * 117.49460 * 145.00095 * 17 15 14 32 32 H 1.08994 * 117.49863 * 336.59580 * 19 18 15 33 33 H 1.08996 * 117.49928 * 121.61806 * 19 18 15 34 34 H 1.08994 * 117.50298 * 238.38849 * 20 18 15 35 35 H 1.09002 * 117.49768 * 23.38316 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3788 -0.5662 3.6186 16 1 3.3456 -1.0203 3.4009 17 6 1.5255 -1.2114 4.7125 18 6 2.2143 0.1310 4.9705 19 6 1.8593 1.5177 5.5108 20 6 3.0930 0.7833 6.0396 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 0.4419 -2.0730 1.3347 26 1 1.8167 -2.5951 0.3319 27 1 1.9617 -2.5869 2.1059 28 1 0.5722 -0.0345 2.5726 29 1 1.9298 1.0870 2.3125 30 1 0.4440 -1.2042 4.5771 31 1 1.9309 -2.0900 5.2143 32 1 2.0249 2.3713 4.8537 33 1 0.9969 1.5942 6.1729 34 1 3.0423 0.3768 7.0496 35 1 4.0705 1.1536 5.7305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722887432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:30 Heat of formation + Delta-G solvation = 60.985709 kcal Electronic energy + Delta-G solvation = -13925.955946 eV Core-core repulsion = 11733.024948 eV Total energy + Delta-G solvation = -2192.930997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.53438 -36.66079 -33.13823 -31.98969 -28.65403 -26.85610 -25.12044 -23.61520 -22.34661 -20.82307 -19.13136 -18.59484 -16.11207 -15.40289 -14.93884 -14.78927 -14.20407 -13.74978 -13.64396 -12.94795 -12.52891 -11.81977 -11.50388 -11.38413 -11.13491 -11.08999 -10.85597 -10.73081 -10.61813 -10.48513 -10.04196 -9.97586 -9.73750 -9.52170 -9.41912 -8.82637 -8.35409 -7.08733 -5.97670 -4.01310 3.34817 3.38819 3.41906 3.80891 3.88125 4.41005 4.48458 4.90433 5.03497 5.31410 5.35332 5.64256 5.67343 5.75614 5.85959 5.88805 5.91533 5.99110 6.16997 6.20982 6.28948 6.32839 6.53235 6.66922 6.73116 6.88131 6.95095 7.17527 7.55042 7.76055 7.87439 8.17667 8.43826 8.65721 9.04579 9.63507 11.09545 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057928 B = 0.006677 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.240549 B = 4192.765474 C = 4308.664935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.535 5.535 13 C 0.037 3.963 14 C 0.085 3.915 15 C -0.079 4.079 16 H 0.110 0.890 17 C -0.132 4.132 18 C -0.232 4.232 19 C -0.132 4.132 20 C -0.134 4.134 21 H 0.087 0.913 22 H 0.030 0.970 23 H 0.006 0.994 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -1.509 12.703 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.258 5.258 13 C -0.112 4.112 14 C -0.043 4.043 15 C -0.098 4.098 16 H 0.128 0.872 17 C -0.169 4.169 18 C -0.233 4.233 19 C -0.169 4.169 20 C -0.170 4.170 21 H 0.106 0.894 22 H 0.049 0.951 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.223 -1.402 12.515 12.653 hybrid contribution -0.690 -0.377 -0.775 1.104 sum 0.533 -1.779 11.740 11.886 Atomic orbital electron populations 1.22396 1.00941 0.99311 1.00430 1.19303 0.89707 0.94542 0.86059 0.94418 1.21098 1.30534 1.12454 0.89716 0.91972 1.24932 0.95261 0.95149 0.98988 1.69878 1.37073 1.23105 1.23445 0.86582 0.79218 0.79590 0.82120 1.20389 1.21421 1.20239 1.62310 1.59489 1.02039 1.01970 1.22208 0.96658 0.91223 1.01120 1.21561 0.95862 0.97673 0.89219 1.22208 1.00521 0.99577 0.87481 0.87179 1.22835 0.98572 0.93096 1.02412 1.21558 1.06856 0.94537 1.00302 1.22573 0.98696 0.93437 1.02215 1.22597 0.95273 1.02394 0.96765 0.89421 0.95136 0.97461 0.92994 0.96769 0.90968 0.93848 0.95425 0.91450 0.89045 0.89126 0.88652 0.89083 0.89131 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.27 37.16 0.31 -3.93 16 2 C 0.21 5.39 2.34 -68.86 -0.16 5.23 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.81 7.88 -34.44 -0.27 -14.08 16 5 H 0.06 1.71 6.77 -52.48 -0.36 1.36 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.75 11.32 55.43 0.63 -25.13 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.77 4.74 -236.28 -1.12 -12.89 16 13 C 0.04 0.73 8.61 60.06 0.52 1.25 16 14 C 0.09 1.62 4.68 -3.82 -0.02 1.60 16 15 C -0.08 -1.27 4.80 -90.62 -0.43 -1.70 16 16 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 17 C -0.13 -1.81 10.18 -26.69 -0.27 -2.09 16 18 C -0.23 -3.23 5.40 -154.48 -0.83 -4.06 16 19 C -0.13 -1.62 10.53 -26.73 -0.28 -1.90 16 20 C -0.13 -1.54 10.53 -26.73 -0.28 -1.83 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 22 H 0.03 0.73 6.48 -51.93 -0.34 0.39 16 23 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.01 0.28 6.51 -51.93 -0.34 -0.06 16 26 H 0.07 1.55 6.41 -51.93 -0.33 1.22 16 27 H 0.04 0.76 7.28 -51.93 -0.38 0.38 16 28 H 0.03 0.53 6.67 -51.93 -0.35 0.19 16 29 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 30 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 279.61 15.07 4.21 4.21 Total: -1.00 -28.32 279.61 -8.80 -37.12 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.67 Total: 0.21 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -1.82 Total: -20.00 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.49 Total: -38.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.32 -8.80 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.105 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds