Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47165 * 2 1 4 4 C 1.46906 * 110.99543 * 69.41284 * 3 2 1 5 5 C 1.50697 * 109.47121 * 76.40697 * 4 3 2 6 6 H 1.07998 * 120.00180 * 359.44700 * 5 4 3 7 7 C 1.37882 * 119.99792 * 179.44230 * 5 4 3 8 8 N 1.31515 * 119.99980 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47037 * 89.99816 * 9 7 5 11 11 H 1.48501 * 109.46895 * 209.99375 * 9 7 5 12 12 H 1.48495 * 109.47204 * 329.99516 * 9 7 5 13 13 C 1.46895 * 111.00601 * 305.45668 * 3 2 1 14 14 C 1.53004 * 109.46806 * 293.95824 * 13 3 2 15 15 H 1.08992 * 115.55155 * 29.41194 * 14 13 3 16 16 C 1.53005 * 117.49593 * 243.74343 * 14 13 3 17 17 C 1.52996 * 117.49703 * 175.08695 * 14 13 3 18 18 C 1.52991 * 138.58686 * 336.58834 * 17 14 13 19 19 C 1.52995 * 138.58776 * 238.37617 * 17 14 13 20 20 H 1.09010 * 109.46664 * 65.49434 * 1 2 3 21 21 H 1.08999 * 109.46889 * 305.50102 * 1 2 3 22 22 H 1.08997 * 109.47312 * 185.49300 * 1 2 3 23 23 H 1.08997 * 109.46649 * 120.00051 * 2 1 3 24 24 H 1.08998 * 109.47258 * 240.00022 * 2 1 3 25 25 H 1.09007 * 109.46250 * 196.40583 * 4 3 2 26 26 H 1.08991 * 109.47490 * 316.40027 * 4 3 2 27 27 H 0.96996 * 119.99844 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46860 * 53.94879 * 13 3 2 29 29 H 1.08997 * 109.47395 * 173.95334 * 13 3 2 30 30 H 1.08998 * 117.49691 * 359.97438 * 16 14 13 31 31 H 1.08998 * 117.50426 * 144.99531 * 16 14 13 32 32 H 1.08996 * 117.49995 * 336.60120 * 18 17 14 33 33 H 1.09008 * 117.49649 * 121.62306 * 18 17 14 34 34 H 1.09000 * 117.50172 * 238.38507 * 19 17 14 35 35 H 1.09000 * 117.49754 * 23.40563 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7405 2.0420 1.2839 5 6 2.7203 1.5558 2.3206 6 1 3.4693 0.8246 2.0547 7 6 2.6605 2.0446 3.6084 8 7 3.5153 1.6200 4.5133 9 14 1.3646 3.3090 4.0683 10 1 0.1403 2.6137 4.5404 11 1 1.8867 4.1816 5.1506 12 1 1.0368 4.1367 2.8798 13 6 1.4452 2.1466 -1.1170 14 6 1.9611 1.5781 -2.4405 15 1 2.2025 0.5152 -2.4334 16 6 2.8224 2.4923 -3.3142 17 6 1.3871 2.1634 -3.7323 18 6 0.1301 2.9003 -4.1988 19 6 0.6357 1.6827 -4.9753 20 1 -0.3633 0.4263 -0.9352 21 1 -0.3633 0.5968 0.8366 22 1 -0.3634 -1.0229 0.0984 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8392 3.1214 1.1686 26 1 0.7260 1.8019 1.6019 27 1 3.4730 1.9636 5.4193 28 1 0.3583 2.0702 -1.0879 29 1 1.7384 3.1930 -1.0322 30 1 3.0212 3.4989 -2.9462 31 1 3.6306 2.0310 -3.8818 32 1 -0.7750 2.7777 -3.6041 33 1 0.2623 3.8802 -4.6577 34 1 1.1004 1.8614 -5.9449 35 1 0.0630 0.7590 -4.8913 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722892783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = 62.340427 kcal Electronic energy + Delta-G solvation = -13873.569205 eV Core-core repulsion = 11680.696952 eV Total energy + Delta-G solvation = -2192.872252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.67559 -36.80966 -32.84517 -32.26737 -29.72041 -27.91670 -24.98049 -22.96658 -22.41667 -20.90466 -19.30685 -18.50585 -16.70873 -15.48549 -15.15550 -14.96432 -14.49114 -14.15920 -13.77774 -13.12025 -12.49176 -12.14553 -12.02151 -11.58869 -11.55490 -11.38984 -11.19961 -10.88219 -10.70510 -10.38238 -10.12719 -9.93001 -9.79188 -9.67894 -9.43287 -9.25726 -8.53346 -7.25778 -6.01412 -3.97400 3.29266 3.37148 3.39038 3.73126 3.82356 4.36012 4.44633 4.83167 4.99646 5.05175 5.30745 5.56278 5.60882 5.65893 5.67038 5.70417 5.79684 5.83905 5.85526 5.98956 6.00434 6.08765 6.12353 6.16148 6.38967 6.47330 6.57601 6.77687 6.94401 7.04315 7.68306 7.96831 8.10753 8.71921 9.09570 9.60938 11.12095 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043515 B = 0.007263 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.309134 B = 3854.252692 C = 3923.678346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 N -0.522 5.522 4 C 0.158 3.842 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.079 3.921 14 C -0.080 4.080 15 H 0.108 0.892 16 C -0.122 4.122 17 C -0.236 4.236 18 C -0.133 4.133 19 C -0.134 4.134 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.024 0.976 26 H -0.009 1.009 27 H 0.263 0.737 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 0.710 -15.213 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.032 3.968 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.049 4.049 14 C -0.099 4.099 15 H 0.125 0.875 16 C -0.158 4.158 17 C -0.237 4.237 18 C -0.170 4.170 19 C -0.170 4.170 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.009 0.991 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.088 0.734 -15.066 16.266 hybrid contribution -1.558 0.732 0.485 1.789 sum -7.646 1.466 -14.582 16.530 Atomic orbital electron populations 1.22417 0.99695 1.01407 1.01343 1.22056 0.91657 0.91460 1.02040 1.62133 1.57505 1.01532 1.03316 1.20243 0.95383 0.94378 0.86779 1.21052 1.15556 1.25048 0.92448 0.90145 1.24896 0.95730 0.96397 0.96401 1.69894 1.36715 1.44144 1.03392 0.86899 0.82304 0.82293 0.78464 1.20393 1.21167 1.19278 1.21701 0.96342 0.97521 0.89377 1.22123 1.00102 0.98859 0.88776 0.87455 1.22788 0.90499 1.00788 1.01771 1.21630 0.95420 1.07892 0.98730 1.22557 0.95903 0.96186 1.02311 1.22589 1.01999 0.98326 0.94123 0.93302 0.92290 0.93010 0.89766 0.92340 0.95804 0.99129 0.92748 0.94955 0.91385 0.88670 0.88960 0.88939 0.88978 0.89014 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 9.10 37.16 0.34 -2.84 16 2 C 0.06 1.06 5.73 -3.82 -0.02 1.04 16 3 N -0.52 -11.00 4.63 -236.07 -1.09 -12.09 16 4 C 0.16 3.87 3.72 -4.97 -0.02 3.85 16 5 C -0.50 -14.43 9.16 -34.44 -0.32 -14.75 16 6 H 0.08 2.52 8.04 -52.49 -0.42 2.10 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 9 Si 0.87 21.70 27.48 -169.99 -4.67 17.03 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 13 C 0.08 1.40 4.86 -3.82 -0.02 1.38 16 14 C -0.08 -1.22 5.70 -90.62 -0.52 -1.73 16 15 H 0.11 1.65 6.45 -51.93 -0.33 1.32 16 16 C -0.12 -1.65 10.18 -26.69 -0.27 -1.92 16 17 C -0.24 -3.10 5.40 -154.48 -0.83 -3.93 16 18 C -0.13 -1.50 10.53 -26.74 -0.28 -1.79 16 19 C -0.13 -1.44 10.53 -26.73 -0.28 -1.73 16 20 H 0.05 0.75 6.53 -51.92 -0.34 0.41 16 21 H 0.06 1.09 6.25 -51.93 -0.32 0.76 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.78 7.46 -51.93 -0.39 1.39 16 24 H 0.06 0.98 6.51 -51.93 -0.34 0.64 16 25 H 0.02 0.60 6.74 -51.93 -0.35 0.25 16 26 H -0.01 -0.21 5.52 -51.93 -0.29 -0.50 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.03 0.56 5.99 -51.93 -0.31 0.25 16 29 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 30 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -30.17 279.42 -8.70 -38.88 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.61 Total: -0.35 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.32 Total: -20.57 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.32 Total: -39.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.17 -8.70 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722892783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.216 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds