Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47165 * 2 1 4 4 C 1.46906 * 110.99543 * 69.41284 * 3 2 1 5 5 C 1.50697 * 109.47121 * 76.40697 * 4 3 2 6 6 H 1.07998 * 120.00180 * 359.44700 * 5 4 3 7 7 C 1.37882 * 119.99792 * 179.44230 * 5 4 3 8 8 N 1.31515 * 119.99980 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47037 * 89.99816 * 9 7 5 11 11 H 1.48501 * 109.46895 * 209.99375 * 9 7 5 12 12 H 1.48495 * 109.47204 * 329.99516 * 9 7 5 13 13 C 1.46895 * 111.00601 * 305.45668 * 3 2 1 14 14 C 1.53004 * 109.46806 * 293.95824 * 13 3 2 15 15 H 1.08992 * 115.55155 * 29.41194 * 14 13 3 16 16 C 1.53005 * 117.49593 * 243.74343 * 14 13 3 17 17 C 1.52996 * 117.49703 * 175.08695 * 14 13 3 18 18 C 1.52991 * 138.58686 * 336.58834 * 17 14 13 19 19 C 1.52995 * 138.58776 * 238.37617 * 17 14 13 20 20 H 1.09010 * 109.46664 * 65.49434 * 1 2 3 21 21 H 1.08999 * 109.46889 * 305.50102 * 1 2 3 22 22 H 1.08997 * 109.47312 * 185.49300 * 1 2 3 23 23 H 1.08997 * 109.46649 * 120.00051 * 2 1 3 24 24 H 1.08998 * 109.47258 * 240.00022 * 2 1 3 25 25 H 1.09007 * 109.46250 * 196.40583 * 4 3 2 26 26 H 1.08991 * 109.47490 * 316.40027 * 4 3 2 27 27 H 0.96996 * 119.99844 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46860 * 53.94879 * 13 3 2 29 29 H 1.08997 * 109.47395 * 173.95334 * 13 3 2 30 30 H 1.08998 * 117.49691 * 359.97438 * 16 14 13 31 31 H 1.08998 * 117.50426 * 144.99531 * 16 14 13 32 32 H 1.08996 * 117.49995 * 336.60120 * 18 17 14 33 33 H 1.09008 * 117.49649 * 121.62306 * 18 17 14 34 34 H 1.09000 * 117.50172 * 238.38507 * 19 17 14 35 35 H 1.09000 * 117.49754 * 23.40563 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7405 2.0420 1.2839 5 6 2.7203 1.5558 2.3206 6 1 3.4693 0.8246 2.0547 7 6 2.6605 2.0446 3.6084 8 7 3.5153 1.6200 4.5133 9 14 1.3646 3.3090 4.0683 10 1 0.1403 2.6137 4.5404 11 1 1.8867 4.1816 5.1506 12 1 1.0368 4.1367 2.8798 13 6 1.4452 2.1466 -1.1170 14 6 1.9611 1.5781 -2.4405 15 1 2.2025 0.5152 -2.4334 16 6 2.8224 2.4923 -3.3142 17 6 1.3871 2.1634 -3.7323 18 6 0.1301 2.9003 -4.1988 19 6 0.6357 1.6827 -4.9753 20 1 -0.3633 0.4263 -0.9352 21 1 -0.3633 0.5968 0.8366 22 1 -0.3634 -1.0229 0.0984 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8392 3.1214 1.1686 26 1 0.7260 1.8019 1.6019 27 1 3.4730 1.9636 5.4193 28 1 0.3583 2.0702 -1.0879 29 1 1.7384 3.1930 -1.0322 30 1 3.0212 3.4989 -2.9462 31 1 3.6306 2.0310 -3.8818 32 1 -0.7750 2.7777 -3.6041 33 1 0.2623 3.8802 -4.6577 34 1 1.1004 1.8614 -5.9449 35 1 0.0630 0.7590 -4.8913 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722892783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = 43.825398 kcal Electronic energy + Delta-G solvation = -13874.372077 eV Core-core repulsion = 11680.696952 eV Total energy + Delta-G solvation = -2193.675124 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90338 -38.19361 -34.77564 -33.58492 -31.39079 -29.64968 -26.53497 -24.71977 -23.25089 -22.33181 -20.75714 -19.63358 -18.88755 -16.90411 -16.71322 -16.28700 -15.83740 -15.44470 -15.26269 -14.74410 -14.41575 -13.71548 -13.41205 -13.25923 -12.82341 -12.76135 -12.51180 -12.34595 -12.18150 -11.94777 -11.82440 -11.54775 -11.48262 -10.83326 -10.78962 -10.72645 -10.57045 -8.89871 -8.27272 -6.29405 1.32979 1.35098 1.45800 2.34309 2.71439 2.83112 3.05591 3.25685 3.57562 3.88085 4.02719 4.22218 4.32418 4.48968 4.51869 4.61265 4.65624 4.68135 4.77562 4.81843 4.86108 4.91509 4.95114 5.00247 5.04163 5.07517 5.20309 5.29444 5.35153 5.42843 5.57797 6.03456 6.45127 6.69313 6.76655 7.33613 8.89859 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043515 B = 0.007263 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.309134 B = 3854.252692 C = 3923.678346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.057 3.943 3 N -0.542 5.542 4 C 0.169 3.831 5 C -0.511 4.511 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.251 1.251 13 C 0.086 3.914 14 C -0.097 4.097 15 H 0.103 0.897 16 C -0.123 4.123 17 C -0.244 4.244 18 C -0.131 4.131 19 C -0.119 4.119 20 H 0.066 0.934 21 H 0.040 0.960 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.022 0.978 26 H -0.003 1.003 27 H 0.266 0.734 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.681 1.592 -17.133 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.071 4.071 3 N -0.265 5.265 4 C 0.042 3.958 5 C -0.549 4.549 6 H 0.053 0.947 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.175 1.175 13 C -0.042 4.042 14 C -0.116 4.116 15 H 0.121 0.879 16 C -0.160 4.160 17 C -0.245 4.245 18 C -0.167 4.167 19 C -0.156 4.156 20 H 0.085 0.915 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.114 1.607 -17.017 18.921 hybrid contribution -0.855 0.378 1.017 1.381 sum -8.969 1.984 -16.000 18.449 Atomic orbital electron populations 1.22302 0.97539 1.02574 1.01396 1.22025 0.93444 0.90190 1.01452 1.62004 1.58993 1.02645 1.02848 1.19968 0.94124 0.94156 0.87506 1.21277 1.15460 1.24126 0.94069 0.94693 1.25834 0.98200 0.98781 0.96189 1.70053 1.38997 1.45998 1.04014 0.85746 0.79248 0.79460 0.78689 1.19168 1.20582 1.17477 1.21663 0.96611 0.96687 0.89241 1.21918 1.02474 0.98712 0.88472 0.87941 1.22815 0.91513 1.00253 1.01423 1.21714 0.95567 1.08838 0.98386 1.22722 0.94828 0.97152 1.02038 1.22758 1.00625 0.98435 0.93737 0.91537 0.94143 0.90927 0.93149 0.90144 0.95993 0.98590 0.92479 0.94263 0.92234 0.89028 0.87886 0.88684 0.87714 0.87335 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.70 9.10 71.98 0.66 -5.05 16 2 C 0.06 2.14 5.73 86.30 0.49 2.64 16 3 N -0.54 -22.88 4.63 -900.79 -4.17 -27.05 16 4 C 0.17 8.31 3.72 85.55 0.32 8.63 16 5 C -0.51 -30.31 9.16 25.60 0.23 -30.07 16 6 H 0.03 2.32 8.04 -2.91 -0.02 2.30 16 7 C 0.01 0.41 5.47 84.66 0.46 0.87 16 8 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.95 44.73 27.48 68.60 1.89 46.62 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 13 C 0.09 2.93 4.86 86.31 0.42 3.35 16 14 C -0.10 -2.81 5.70 -10.79 -0.06 -2.87 16 15 H 0.10 3.02 6.45 -2.39 -0.02 3.01 16 16 C -0.12 -3.15 10.18 30.62 0.31 -2.84 16 17 C -0.24 -5.77 5.40 -52.16 -0.28 -6.06 16 18 C -0.13 -2.52 10.53 30.59 0.32 -2.20 16 19 C -0.12 -2.13 10.53 30.59 0.32 -1.81 16 20 H 0.07 1.87 6.53 -2.38 -0.02 1.86 16 21 H 0.04 1.43 6.25 -2.39 -0.01 1.41 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 2.21 7.46 -2.39 -0.02 2.19 16 24 H 0.08 2.65 6.51 -2.39 -0.02 2.63 16 25 H 0.02 1.08 6.74 -2.38 -0.02 1.07 16 26 H 0.00 -0.17 5.52 -2.39 -0.01 -0.18 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.04 1.28 5.99 -2.38 -0.01 1.27 16 29 H 0.06 2.11 7.56 -2.39 -0.02 2.09 16 30 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.18 279.42 2.21 -63.97 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.99 Total: 11.96 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.20 Total: -35.42 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.87 Total: -87.14 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.89 Total: 46.62 kcal Total: -66.18 2.21 -63.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722892783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.796 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds