Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47177 * 2 1 4 4 C 1.46902 * 111.00235 * 66.88133 * 3 2 1 5 5 C 1.50699 * 109.47076 * 66.04581 * 4 3 2 6 6 H 1.08004 * 120.00001 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00049 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99829 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99903 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47064 * 269.99670 * 9 7 5 11 11 H 1.48508 * 109.46990 * 149.99888 * 9 7 5 12 12 H 1.48497 * 109.47286 * 30.00175 * 9 7 5 13 13 C 1.46902 * 110.99989 * 302.92684 * 3 2 1 14 14 C 1.52998 * 109.47127 * 287.27917 * 13 3 2 15 15 H 1.09004 * 115.55293 * 281.93949 * 14 13 3 16 16 C 1.53007 * 117.50120 * 67.61029 * 14 13 3 17 17 C 1.52998 * 117.49786 * 136.27046 * 14 13 3 18 18 C 1.52993 * 138.58739 * 121.62498 * 17 14 13 19 19 C 1.52993 * 138.59124 * 23.40273 * 17 14 13 20 20 H 1.09000 * 109.46792 * 177.81011 * 1 2 3 21 21 H 1.09002 * 109.47253 * 297.81652 * 1 2 3 22 22 H 1.09002 * 109.46999 * 57.81560 * 1 2 3 23 23 H 1.08998 * 109.47541 * 239.99648 * 2 1 3 24 24 H 1.09006 * 109.47030 * 119.99639 * 2 1 3 25 25 H 1.08999 * 109.47023 * 306.04908 * 4 3 2 26 26 H 1.08996 * 109.47328 * 186.04849 * 4 3 2 27 27 H 0.97006 * 119.99751 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47132 * 47.27598 * 13 3 2 29 29 H 1.08999 * 109.47266 * 167.28106 * 13 3 2 30 30 H 1.08995 * 117.50354 * 214.97813 * 16 14 13 31 31 H 1.09003 * 117.49401 * 359.97438 * 16 14 13 32 32 H 1.08998 * 117.49527 * 336.58249 * 18 17 14 33 33 H 1.08991 * 117.50378 * 121.61747 * 18 17 14 34 34 H 1.08998 * 117.49946 * 238.38630 * 19 17 14 35 35 H 1.09004 * 117.49544 * 23.38053 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6875 2.0609 1.2613 5 6 2.4437 1.4132 2.3925 6 1 3.1053 0.5829 2.1943 7 6 2.2911 1.8807 3.6806 8 7 2.9514 1.3159 4.6677 9 14 1.1463 3.3164 4.0235 10 1 1.9031 4.5895 3.9161 11 1 0.5868 3.1872 5.3931 12 1 0.0389 3.3138 3.0342 13 6 1.4923 2.1298 -1.1511 14 6 2.1872 1.6537 -2.4284 15 1 3.1917 2.0446 -2.5908 16 6 1.9000 0.2264 -2.8989 17 6 1.3134 1.4168 -3.6617 18 6 1.2057 1.9147 -5.1044 19 6 -0.0385 1.8721 -4.2148 20 1 -0.3633 -1.0269 -0.0393 21 1 -0.3634 0.4796 0.9089 22 1 -0.3633 0.5474 -0.8698 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.6165 1.9788 1.4463 26 1 1.9650 3.1127 1.1939 27 1 2.8437 1.6445 5.5740 28 1 0.4194 1.9568 -1.2352 29 1 1.6789 3.1946 -1.0114 30 1 2.7153 -0.3215 -3.3712 31 1 1.2163 -0.3735 -2.2982 32 1 1.6283 2.8933 -5.3319 33 1 1.2812 1.1732 -5.8996 34 1 -0.7813 1.1026 -4.4248 35 1 -0.4344 2.8225 -3.8568 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722892784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = 69.391539 kcal Electronic energy + Delta-G solvation = -14031.926490 eV Core-core repulsion = 11839.359996 eV Total energy + Delta-G solvation = -2192.566493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90303 -36.62524 -32.86450 -32.05310 -29.85599 -27.91599 -25.14797 -22.70320 -22.41917 -20.94806 -19.45397 -18.47329 -16.66377 -15.62373 -15.05500 -15.00384 -14.44598 -14.05760 -13.78057 -13.05690 -12.56111 -12.09697 -11.95463 -11.60644 -11.55197 -11.34277 -10.97707 -10.93142 -10.57343 -10.36545 -10.19368 -9.95522 -9.78535 -9.63395 -9.33980 -9.14172 -8.53580 -7.23254 -6.02260 -3.98593 3.29725 3.37055 3.39059 3.74474 3.81649 4.36828 4.44324 4.91208 5.00825 5.10081 5.30779 5.53990 5.57198 5.65116 5.71316 5.77783 5.82744 5.87551 5.89680 5.95357 6.01386 6.10400 6.15142 6.31397 6.41582 6.56553 6.57592 6.87856 6.99888 7.12142 7.65171 7.98291 8.14511 8.70996 9.07029 9.60053 11.11016 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.050411 B = 0.007421 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.299885 B = 3771.962245 C = 3920.602169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 N -0.521 5.521 4 C 0.158 3.842 5 C -0.505 4.505 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.072 3.928 14 C -0.077 4.077 15 H 0.105 0.895 16 C -0.130 4.130 17 C -0.234 4.234 18 C -0.134 4.134 19 C -0.133 4.133 20 H 0.049 0.951 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.085 0.915 25 H -0.008 1.008 26 H 0.021 0.979 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 0.230 -15.560 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.082 4.082 3 N -0.244 5.244 4 C 0.032 3.968 5 C -0.543 4.543 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.056 4.056 14 C -0.096 4.096 15 H 0.123 0.877 16 C -0.166 4.166 17 C -0.235 4.235 18 C -0.171 4.171 19 C -0.170 4.170 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.010 0.990 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.933 0.240 -15.379 16.153 hybrid contribution -1.468 0.848 0.417 1.746 sum -6.401 1.088 -14.963 16.311 Atomic orbital electron populations 1.22426 0.99877 1.01045 1.01693 1.22332 0.91681 0.91441 1.02697 1.62066 1.58293 1.01760 1.02248 1.20225 0.94693 0.94420 0.87484 1.21044 1.25894 1.17705 0.89677 0.90137 1.24890 0.95659 0.96631 0.96190 1.69897 1.42365 1.41826 1.00026 0.86891 0.81840 0.83570 0.77628 1.20199 1.21263 1.19340 1.21700 0.96220 0.97941 0.89759 1.22041 0.98088 0.98249 0.91205 0.87746 1.23003 1.01975 0.91060 1.00600 1.21650 1.00744 1.06353 0.94724 1.22590 1.01276 1.01749 0.91444 1.22562 0.90033 1.02110 1.02316 0.93173 0.92097 0.93246 0.91175 0.89645 0.99013 0.96115 0.92742 0.94589 0.91400 0.89021 0.87606 0.88955 0.89056 0.89064 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 8.74 37.16 0.32 -2.99 16 2 C 0.05 0.89 5.34 -3.83 -0.02 0.87 16 3 N -0.52 -10.95 4.65 -236.07 -1.10 -12.05 16 4 C 0.16 3.86 3.63 -4.98 -0.02 3.85 16 5 C -0.50 -14.42 8.97 -34.44 -0.31 -14.73 16 6 H 0.08 2.50 7.39 -52.48 -0.39 2.11 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.07 1.27 5.18 -3.82 -0.02 1.25 16 14 C -0.08 -1.17 5.98 -90.62 -0.54 -1.71 16 15 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 16 C -0.13 -1.78 8.62 -26.69 -0.23 -2.01 16 17 C -0.23 -3.07 5.31 -154.48 -0.82 -3.89 16 18 C -0.13 -1.44 10.53 -26.73 -0.28 -1.72 16 19 C -0.13 -1.52 10.53 -26.73 -0.28 -1.80 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 1.18 6.56 -51.93 -0.34 0.84 16 22 H 0.05 0.80 5.86 -51.93 -0.30 0.49 16 23 H 0.07 1.18 4.57 -51.93 -0.24 0.94 16 24 H 0.09 1.86 6.70 -51.93 -0.35 1.52 16 25 H -0.01 -0.19 5.35 -51.93 -0.28 -0.47 16 26 H 0.02 0.51 7.28 -51.93 -0.38 0.13 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.04 0.62 5.44 -51.93 -0.28 0.34 16 29 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 1.48 5.25 -51.93 -0.27 1.21 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 272.62 15.07 4.11 4.11 Total: -1.00 -30.06 272.62 -8.54 -38.60 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.36 Total: 0.35 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -2.30 Total: -21.02 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.32 Total: -39.08 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.06 -8.54 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722892784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.990 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds