Wall clock time and date at job start Mon Mar 30 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 120.00226 * 2 1 4 4 H 1.08002 * 120.00072 * 202.90391 * 3 2 1 5 5 C 1.38808 * 119.99573 * 22.91381 * 3 2 1 6 6 N 1.31622 * 120.00650 * 11.59448 * 5 3 2 7 7 Si 1.86804 * 119.99886 * 191.59734 * 5 3 2 8 8 H 1.48502 * 109.47282 * 89.99699 * 7 5 3 9 9 H 1.48499 * 109.47220 * 209.99658 * 7 5 3 10 10 H 1.48504 * 109.46920 * 329.99929 * 7 5 3 11 11 C 1.46504 * 120.00190 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.47936 * 180.02562 * 11 2 1 13 13 C 1.52946 * 109.47128 * 59.99758 * 11 2 1 14 14 C 1.52943 * 109.81956 * 177.02432 * 13 11 2 15 15 C 1.53187 * 109.44587 * 62.98876 * 14 13 11 16 16 C 1.53150 * 108.88382 * 303.42538 * 15 14 13 17 17 C 1.52811 * 117.75006 * 199.62419 * 16 15 14 18 18 C 1.52841 * 117.67796 * 268.50705 * 16 15 14 19 19 C 1.53156 * 115.00380 * 53.93951 * 16 15 14 20 20 H 1.08998 * 109.47267 * 273.84121 * 1 2 3 21 21 H 1.09008 * 109.46731 * 33.83816 * 1 2 3 22 22 H 1.08992 * 109.47289 * 153.83193 * 1 2 3 23 23 H 0.96999 * 120.00343 * 180.02562 * 6 5 3 24 24 H 1.09002 * 109.40829 * 56.91666 * 13 11 2 25 25 H 1.08995 * 109.35408 * 297.09801 * 13 11 2 26 26 H 1.08998 * 109.47713 * 302.99789 * 14 13 11 27 27 H 1.08994 * 109.47861 * 182.98409 * 14 13 11 28 28 H 1.09000 * 109.56664 * 183.60276 * 15 14 13 29 29 H 1.08998 * 109.66235 * 63.31057 * 15 14 13 30 30 H 1.08997 * 117.49620 * 0.15363 * 17 16 15 31 31 H 1.08988 * 117.50047 * 215.11290 * 17 16 15 32 32 H 1.08998 * 117.49887 * 144.78047 * 18 16 15 33 33 H 1.08998 * 117.52899 * 359.71754 * 18 16 15 34 34 H 1.09004 * 109.56485 * 65.88992 * 19 16 15 35 35 H 1.08996 * 109.56233 * 186.24318 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1659 1.2228 -0.3640 5 6 1.5378 2.3406 0.4681 6 7 0.3961 2.2632 1.1184 7 14 2.3347 4.0045 0.1750 8 1 1.8493 4.5662 -1.1112 9 1 1.9782 4.9262 1.2834 10 1 3.8100 3.8439 0.1196 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0697 0.0000 13 6 1.8280 -2.0702 -1.2497 14 6 2.6436 -3.3632 -1.2962 15 6 2.2874 -4.2346 -0.0878 16 6 2.5328 -3.4308 1.1925 17 6 2.6909 -4.2059 2.4999 18 6 3.9081 -3.5445 1.8495 19 6 1.8271 -2.0727 1.2495 20 1 -0.3634 0.0688 1.0253 21 1 -0.3633 0.8537 -0.5723 22 1 -0.3633 -0.9223 -0.4532 23 1 -0.0317 3.0701 1.4451 24 1 2.0410 -1.4753 -2.1379 25 1 0.7657 -2.3127 -1.2222 26 1 3.7066 -3.1236 -1.2707 27 1 2.4150 -3.9043 -2.2144 28 1 2.9131 -5.1271 -0.0841 29 1 1.2381 -4.5248 -0.1414 30 1 2.6232 -5.2927 2.4520 31 1 2.2946 -3.7493 3.4067 32 1 4.3123 -2.6527 2.3285 33 1 4.6411 -4.1962 1.3742 34 1 0.7479 -2.2231 1.2804 35 1 2.1478 -1.5318 2.1398 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723420851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:01 Heat of formation + Delta-G solvation = 28.846473 kcal Electronic energy + Delta-G solvation = -14449.198439 eV Core-core repulsion = 12254.873780 eV Total energy + Delta-G solvation = -2194.324659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.01318 -35.74320 -33.46473 -31.18564 -28.57237 -26.90527 -25.89875 -23.16388 -22.21788 -21.38345 -19.51002 -17.99731 -16.59899 -15.18011 -14.95256 -14.46365 -13.90318 -13.54562 -13.16468 -12.55399 -12.45221 -12.31020 -11.95022 -11.27938 -11.12391 -10.88479 -10.82672 -10.61327 -10.55155 -10.34699 -10.17473 -10.16861 -9.74390 -9.55500 -9.46067 -9.05124 -8.45630 -6.64314 -5.64133 -3.09556 3.42194 3.48207 3.49607 4.09434 4.54804 4.94846 5.12163 5.18435 5.30735 5.51002 5.56913 5.64910 5.79142 5.87947 5.93281 5.97818 6.12263 6.15512 6.24646 6.39485 6.41690 6.45955 6.50064 6.65817 6.69866 6.86154 6.92094 7.16744 7.18233 7.49765 7.81905 7.88424 8.49546 9.33173 9.97578 10.47225 11.40645 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042890 B = 0.008741 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.670798 B = 3202.437188 C = 3325.404219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.599 5.599 3 C -0.250 4.250 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.183 3.817 12 H 0.059 0.941 13 C -0.131 4.131 14 C -0.112 4.112 15 C -0.078 4.078 16 C -0.112 4.112 17 C -0.184 4.184 18 C -0.177 4.177 19 C -0.090 4.090 20 H 0.026 0.974 21 H 0.041 0.959 22 H -0.002 1.002 23 H 0.251 0.749 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -11.617 -1.274 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.320 5.320 3 C -0.379 4.379 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.075 3.925 12 H 0.078 0.922 13 C -0.170 4.170 14 C -0.150 4.150 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.221 4.221 18 C -0.213 4.213 19 C -0.130 4.130 20 H 0.044 0.956 21 H 0.060 0.940 22 H 0.016 0.984 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.339 -11.439 -1.205 11.978 hybrid contribution 0.331 0.959 0.037 1.015 sum 3.670 -10.481 -1.168 11.166 Atomic orbital electron populations 1.20725 0.82919 0.95433 0.98961 1.43986 1.01777 1.00368 1.85874 1.19252 0.98143 0.85638 1.34912 0.91540 1.25019 0.97884 0.98421 0.98550 1.70072 1.18514 1.26931 1.40001 0.86269 0.78787 0.84324 0.77263 1.21607 1.21831 1.20565 1.20283 0.95756 0.85659 0.90815 0.92236 1.22020 0.99426 0.95323 1.00265 1.21477 1.00330 0.96543 0.96626 1.21112 1.00874 0.96498 0.93014 1.21619 0.99058 0.97873 0.92748 1.22952 1.03286 0.98639 0.97231 1.22966 0.91150 1.02722 1.04511 1.21723 0.99202 0.91383 1.00659 0.95614 0.94029 0.98387 0.93901 0.92366 0.92670 0.92311 0.92855 0.92765 0.91941 0.89557 0.89168 0.88950 0.89505 0.92269 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 7.95 59.85 0.48 4.64 16 2 N -0.60 -15.36 2.81 -173.41 -0.49 -15.85 16 3 C -0.25 -7.02 9.59 -15.06 -0.14 -7.17 16 4 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 5 C 0.00 -0.03 5.12 -17.43 -0.09 -0.12 16 6 N -0.91 -27.08 10.64 55.49 0.59 -26.49 16 7 Si 0.90 22.30 29.57 -169.99 -5.03 17.28 16 8 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.18 3.86 2.59 -67.87 -0.18 3.68 16 12 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 13 C -0.13 -2.36 5.04 -26.79 -0.13 -2.50 16 14 C -0.11 -1.63 5.93 -26.66 -0.16 -1.78 16 15 C -0.08 -1.07 5.67 -26.56 -0.15 -1.22 16 16 C -0.11 -1.74 1.97 -154.53 -0.31 -2.04 16 17 C -0.18 -2.51 9.99 -26.81 -0.27 -2.78 16 18 C -0.18 -2.50 9.93 -26.79 -0.27 -2.76 16 19 C -0.09 -1.73 5.00 -26.56 -0.13 -1.87 16 20 H 0.03 0.70 7.42 -51.93 -0.39 0.32 16 21 H 0.04 1.13 7.21 -51.92 -0.37 0.76 16 22 H 0.00 -0.05 6.48 -51.93 -0.34 -0.39 16 23 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 1.01 6.77 -51.93 -0.35 0.66 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.25 8.14 -51.94 -0.42 0.83 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.18 7.57 -51.93 -0.39 0.79 16 35 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -29.32 273.90 -8.16 -37.49 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.02 Total: -2.64 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.35 Total: -13.92 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.10 Total: -42.33 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.32 -8.16 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723420851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.333 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds