Wall clock time and date at job start Mon Mar 30 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 120.00226 * 2 1 4 4 H 1.08002 * 120.00072 * 202.90391 * 3 2 1 5 5 C 1.38808 * 119.99573 * 22.91381 * 3 2 1 6 6 N 1.31622 * 120.00650 * 11.59448 * 5 3 2 7 7 Si 1.86804 * 119.99886 * 191.59734 * 5 3 2 8 8 H 1.48502 * 109.47282 * 89.99699 * 7 5 3 9 9 H 1.48499 * 109.47220 * 209.99658 * 7 5 3 10 10 H 1.48504 * 109.46920 * 329.99929 * 7 5 3 11 11 C 1.46504 * 120.00190 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.47936 * 180.02562 * 11 2 1 13 13 C 1.52946 * 109.47128 * 59.99758 * 11 2 1 14 14 C 1.52943 * 109.81956 * 177.02432 * 13 11 2 15 15 C 1.53187 * 109.44587 * 62.98876 * 14 13 11 16 16 C 1.53150 * 108.88382 * 303.42538 * 15 14 13 17 17 C 1.52811 * 117.75006 * 199.62419 * 16 15 14 18 18 C 1.52841 * 117.67796 * 268.50705 * 16 15 14 19 19 C 1.53156 * 115.00380 * 53.93951 * 16 15 14 20 20 H 1.08998 * 109.47267 * 273.84121 * 1 2 3 21 21 H 1.09008 * 109.46731 * 33.83816 * 1 2 3 22 22 H 1.08992 * 109.47289 * 153.83193 * 1 2 3 23 23 H 0.96999 * 120.00343 * 180.02562 * 6 5 3 24 24 H 1.09002 * 109.40829 * 56.91666 * 13 11 2 25 25 H 1.08995 * 109.35408 * 297.09801 * 13 11 2 26 26 H 1.08998 * 109.47713 * 302.99789 * 14 13 11 27 27 H 1.08994 * 109.47861 * 182.98409 * 14 13 11 28 28 H 1.09000 * 109.56664 * 183.60276 * 15 14 13 29 29 H 1.08998 * 109.66235 * 63.31057 * 15 14 13 30 30 H 1.08997 * 117.49620 * 0.15363 * 17 16 15 31 31 H 1.08988 * 117.50047 * 215.11290 * 17 16 15 32 32 H 1.08998 * 117.49887 * 144.78047 * 18 16 15 33 33 H 1.08998 * 117.52899 * 359.71754 * 18 16 15 34 34 H 1.09004 * 109.56485 * 65.88992 * 19 16 15 35 35 H 1.08996 * 109.56233 * 186.24318 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1659 1.2228 -0.3640 5 6 1.5378 2.3406 0.4681 6 7 0.3961 2.2632 1.1184 7 14 2.3347 4.0045 0.1750 8 1 1.8493 4.5662 -1.1112 9 1 1.9782 4.9262 1.2834 10 1 3.8100 3.8439 0.1196 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0697 0.0000 13 6 1.8280 -2.0702 -1.2497 14 6 2.6436 -3.3632 -1.2962 15 6 2.2874 -4.2346 -0.0878 16 6 2.5328 -3.4308 1.1925 17 6 2.6909 -4.2059 2.4999 18 6 3.9081 -3.5445 1.8495 19 6 1.8271 -2.0727 1.2495 20 1 -0.3634 0.0688 1.0253 21 1 -0.3633 0.8537 -0.5723 22 1 -0.3633 -0.9223 -0.4532 23 1 -0.0317 3.0701 1.4451 24 1 2.0410 -1.4753 -2.1379 25 1 0.7657 -2.3127 -1.2222 26 1 3.7066 -3.1236 -1.2707 27 1 2.4150 -3.9043 -2.2144 28 1 2.9131 -5.1271 -0.0841 29 1 1.2381 -4.5248 -0.1414 30 1 2.6232 -5.2927 2.4520 31 1 2.2946 -3.7493 3.4067 32 1 4.3123 -2.6527 2.3285 33 1 4.6411 -4.1962 1.3742 34 1 0.7479 -2.2231 1.2804 35 1 2.1478 -1.5318 2.1398 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723420851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:01 Heat of formation + Delta-G solvation = 13.261771 kcal Electronic energy + Delta-G solvation = -14449.874243 eV Core-core repulsion = 12254.873780 eV Total energy + Delta-G solvation = -2195.000463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36384 -37.46865 -35.03124 -33.03319 -30.30452 -28.23793 -28.02181 -25.04304 -23.33707 -22.76609 -21.11761 -19.42366 -18.63402 -17.03026 -16.19655 -16.05895 -15.59287 -15.06181 -14.71801 -14.26498 -14.10098 -13.92114 -13.36479 -12.85344 -12.81714 -12.59138 -12.42965 -12.29233 -12.14422 -12.03782 -11.92916 -11.77788 -11.46410 -11.11204 -10.77554 -10.62211 -10.33001 -8.73863 -7.81606 -5.29710 1.44405 1.45797 1.54671 2.50057 2.93955 3.30871 3.59054 3.88492 3.93238 4.04042 4.22013 4.32402 4.41869 4.56123 4.58568 4.73681 4.81706 4.83313 4.89300 5.04295 5.07362 5.15272 5.18727 5.25857 5.32267 5.35545 5.38880 5.49468 5.55860 5.65209 5.67908 5.73235 6.34889 7.16683 7.90860 8.34928 9.21520 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042890 B = 0.008741 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.670798 B = 3202.437188 C = 3325.404219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.616 5.616 3 C -0.261 4.261 4 H 0.067 0.933 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.285 1.285 9 H -0.295 1.295 10 H -0.269 1.269 11 C 0.177 3.823 12 H 0.047 0.953 13 C -0.122 4.122 14 C -0.105 4.105 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.170 4.170 18 C -0.173 4.173 19 C -0.079 4.079 20 H -0.002 1.002 21 H 0.014 0.986 22 H 0.028 0.972 23 H 0.247 0.753 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -13.592 -2.028 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.338 5.338 3 C -0.392 4.392 4 H 0.085 0.915 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.193 1.193 11 C 0.071 3.929 12 H 0.065 0.935 13 C -0.161 4.161 14 C -0.143 4.143 15 C -0.109 4.109 16 C -0.129 4.129 17 C -0.207 4.207 18 C -0.210 4.210 19 C -0.119 4.119 20 H 0.016 0.984 21 H 0.032 0.968 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.548 -13.451 -1.969 14.335 hybrid contribution -0.022 1.549 0.289 1.576 sum 4.526 -11.902 -1.680 12.844 Atomic orbital electron populations 1.20408 0.83172 0.95604 0.97002 1.44258 1.01968 1.01523 1.86076 1.19584 0.98318 0.86969 1.34295 0.91479 1.25811 0.98651 1.01905 0.98763 1.70245 1.19915 1.27426 1.41224 0.85230 0.78405 0.79785 0.76831 1.21223 1.22111 1.19337 1.20495 0.94538 0.84571 0.93283 0.93494 1.21878 0.99940 0.96659 0.97638 1.21447 0.99653 0.94754 0.98449 1.21115 1.01823 0.96858 0.91075 1.21529 1.00019 0.96317 0.95080 1.23025 1.02067 0.99943 0.95644 1.23024 0.91212 1.02657 1.04111 1.21460 0.98775 0.93477 0.98144 0.98400 0.96751 0.95402 0.94387 0.93577 0.92948 0.92057 0.90229 0.89745 0.91567 0.86746 0.90054 0.90606 0.87004 0.93543 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.56 7.95 127.77 1.02 10.58 16 2 N -0.62 -32.37 2.81 -702.56 -1.98 -34.35 16 3 C -0.26 -15.00 9.59 84.03 0.81 -14.20 16 4 H 0.07 3.75 7.82 -2.91 -0.02 3.73 16 5 C -0.06 -3.30 5.12 84.86 0.43 -2.87 16 6 N -0.94 -57.76 10.64 21.65 0.23 -57.53 16 7 Si 0.97 46.56 29.57 68.60 2.03 48.59 16 8 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 9 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 C 0.18 7.53 2.59 45.03 0.12 7.64 16 12 H 0.05 2.08 7.86 -2.39 -0.02 2.06 16 13 C -0.12 -4.24 5.04 30.56 0.15 -4.09 16 14 C -0.11 -2.71 5.93 30.64 0.18 -2.53 16 15 C -0.07 -1.70 5.67 30.71 0.17 -1.53 16 16 C -0.13 -3.71 1.97 -52.20 -0.10 -3.81 16 17 C -0.17 -4.18 9.99 30.54 0.31 -3.87 16 18 C -0.17 -4.48 9.93 30.55 0.30 -4.18 16 19 C -0.08 -3.07 5.00 30.70 0.15 -2.91 16 20 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 21 H 0.01 0.79 7.21 -2.38 -0.02 0.77 16 22 H 0.03 1.25 6.48 -2.39 -0.02 1.24 16 23 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.84 6.77 -2.39 -0.02 1.82 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.88 7.57 -2.38 -0.02 1.86 16 35 H 0.03 1.25 8.09 -2.39 -0.02 1.23 16 Total: -1.00 -64.39 273.90 4.85 -59.53 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.03 Total: 5.52 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.54 Total: -21.76 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -1.75 Total: -91.88 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -64.39 4.85 -59.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723420851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.794 kcal (2) G-P(sol) polarization free energy of solvation -64.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds