Wall clock time and date at job start Mon Mar 30 2020 02:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46825 * 2 1 4 4 C 1.50707 * 109.46824 * 119.99802 * 2 1 3 5 5 H 1.08001 * 119.99802 * 84.97127 * 4 2 1 6 6 C 1.37878 * 119.99921 * 264.96504 * 4 2 1 7 7 N 1.31512 * 119.99409 * 176.83132 * 6 4 2 8 8 Si 1.86797 * 120.00045 * 356.83917 * 6 4 2 9 9 H 1.48505 * 109.46824 * 274.84450 * 8 6 4 10 10 H 1.48495 * 109.47428 * 34.84705 * 8 6 4 11 11 H 1.48503 * 109.47098 * 154.84990 * 8 6 4 12 12 N 1.46898 * 109.47360 * 240.00007 * 2 1 3 13 13 C 1.46896 * 110.99922 * 85.00150 * 12 2 1 14 14 C 1.53004 * 109.47044 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.47267 * 179.97438 * 14 13 12 16 16 C 1.54639 * 111.03712 * 287.02422 * 15 14 13 17 17 C 1.51104 * 104.72523 * 217.33297 * 16 15 14 18 18 C 1.30523 * 111.10324 * 16.43314 * 17 16 15 19 19 C 1.51109 * 111.10712 * 0.02562 * 18 17 16 20 20 H 1.08999 * 109.47448 * 294.57332 * 1 2 3 21 21 H 1.09004 * 109.47300 * 54.57089 * 1 2 3 22 22 H 1.08997 * 109.47260 * 174.57286 * 1 2 3 23 23 H 0.97002 * 119.99436 * 180.02562 * 7 6 4 24 24 H 1.00899 * 110.99940 * 208.95561 * 12 2 1 25 25 H 1.09002 * 109.46916 * 299.99694 * 13 12 2 26 26 H 1.08999 * 109.47249 * 60.00015 * 13 12 2 27 27 H 1.08996 * 109.47004 * 299.99977 * 14 13 12 28 28 H 1.08999 * 109.47245 * 59.99817 * 14 13 12 29 29 H 1.08998 * 110.91482 * 51.02847 * 15 14 13 30 30 H 1.09000 * 110.38551 * 336.14494 * 16 15 14 31 31 H 1.09000 * 110.38850 * 98.51949 * 16 15 14 32 32 H 1.08001 * 124.44918 * 196.45643 * 17 16 15 33 33 H 1.08002 * 124.44894 * 180.02562 * 18 17 16 34 34 H 1.08999 * 110.38379 * 224.75229 * 19 18 17 35 35 H 1.08995 * 110.38799 * 102.36959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.1349 -1.7855 1.2293 6 6 2.3608 0.0122 2.3579 7 7 2.7396 -0.6120 3.4517 8 14 2.2678 1.8777 2.3316 9 1 3.5345 2.4288 1.7866 10 1 1.1329 2.3047 1.4744 11 1 2.0622 2.3826 3.7129 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 6 2.6600 0.4197 -4.7696 16 6 1.2434 0.7466 -5.2965 17 6 1.3984 0.8154 -6.7980 18 6 2.5152 0.2589 -7.1811 19 6 3.2909 -0.2745 -5.9991 20 1 -0.3634 0.4273 0.9346 21 1 -0.3634 0.5957 -0.8374 22 1 -0.3633 -1.0230 -0.0972 23 1 2.9704 -0.1036 4.2450 24 1 2.9173 -1.1205 -1.0286 25 1 1.0871 0.6163 -2.5525 26 1 2.7589 1.0462 -2.1181 27 1 3.5904 -0.9272 -3.3690 28 1 1.9185 -1.3565 -3.8029 29 1 3.2021 1.3298 -4.5128 30 1 0.5447 -0.0440 -5.0228 31 1 0.9047 1.7060 -4.9054 32 1 0.6798 1.2662 -7.4664 33 1 2.8420 0.1888 -8.2082 34 1 4.3445 -0.0090 -6.0854 35 1 3.1756 -1.3559 -5.9260 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724205433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:11 Heat of formation + Delta-G solvation = -20.648152 kcal Electronic energy + Delta-G solvation = -13594.174330 eV Core-core repulsion = 11397.703423 eV Total energy + Delta-G solvation = -2196.470907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83919 -37.81430 -34.84491 -33.26390 -30.52796 -29.03320 -27.45913 -26.79797 -23.17146 -21.60245 -20.77673 -19.57762 -19.03762 -17.22590 -16.91126 -16.06136 -15.62960 -15.49565 -14.80860 -14.45922 -14.11124 -13.55844 -13.31952 -13.06509 -12.95792 -12.83399 -12.62423 -12.51963 -12.24841 -11.97724 -11.87752 -11.80182 -11.65750 -11.26155 -10.99613 -10.77376 -9.73047 -9.08549 -8.32711 -6.38375 1.30235 1.32844 1.42688 1.43841 2.30525 3.00707 3.48794 3.73519 3.81815 4.11838 4.29119 4.42860 4.49839 4.53115 4.56582 4.71669 4.88445 4.90217 4.92117 4.94814 4.99567 5.08659 5.10095 5.15436 5.23154 5.31814 5.51018 5.53027 5.68218 5.69388 6.04725 6.07888 6.54686 6.68531 6.85930 7.31364 8.84115 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.055201 B = 0.006008 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.112118 B = 4659.467454 C = 4716.013545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.522 4.522 5 H 0.037 0.963 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.941 3.059 9 H -0.269 1.269 10 H -0.248 1.248 11 H -0.284 1.284 12 N -0.690 5.690 13 C 0.058 3.942 14 C -0.095 4.095 15 C -0.091 4.091 16 C -0.101 4.101 17 C -0.175 4.175 18 C -0.173 4.173 19 C -0.098 4.098 20 H 0.036 0.964 21 H 0.046 0.954 22 H 0.045 0.955 23 H 0.267 0.733 24 H 0.335 0.665 25 H 0.066 0.934 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 5.170 -19.570 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.019 0.981 4 C -0.561 4.561 5 H 0.055 0.945 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.765 3.235 9 H -0.195 1.195 10 H -0.172 1.172 11 H -0.210 1.210 12 N -0.321 5.321 13 C -0.071 4.071 14 C -0.133 4.133 15 C -0.110 4.110 16 C -0.138 4.138 17 C -0.193 4.193 18 C -0.190 4.190 19 C -0.135 4.135 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.152 0.848 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.094 0.906 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.457 4.943 -19.545 20.213 hybrid contribution 0.831 1.023 0.881 1.585 sum -0.626 5.966 -18.663 19.604 Atomic orbital electron populations 1.21760 0.96765 1.00454 0.98963 1.19461 0.93465 0.91892 0.88033 0.98056 1.21305 1.43309 0.94278 0.97180 0.94487 1.25877 0.94063 1.03425 0.94811 1.70045 1.47299 1.37955 1.03150 0.85832 0.79830 0.80183 0.77651 1.19464 1.17212 1.20956 1.60643 1.32811 1.33457 1.05160 1.22051 0.99998 0.93875 0.91185 1.21475 1.01174 0.97896 0.92751 1.22009 0.96456 0.98386 0.94161 1.21501 0.97074 1.01765 0.93501 1.23463 0.98596 1.00707 0.96522 1.23473 0.96785 0.99352 0.99432 1.21455 0.99703 1.00339 0.92018 0.94511 0.93524 0.93563 0.92385 0.84756 0.91517 0.96816 0.91979 0.91423 0.90684 0.90908 0.91374 0.84708 0.84407 0.90633 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.36 71.98 0.67 -4.56 16 2 C 0.18 8.54 2.23 44.17 0.10 8.64 16 3 H 0.00 0.09 5.02 -2.39 -0.01 0.07 16 4 C -0.52 -29.90 8.84 25.60 0.23 -29.67 16 5 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 6 C 0.02 0.95 5.47 84.66 0.46 1.41 16 7 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 8 Si 0.94 44.22 26.95 68.60 1.85 46.07 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.25 -10.92 6.87 99.48 0.68 -10.24 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 N -0.69 -28.37 6.30 -495.45 -3.12 -31.49 16 13 C 0.06 1.91 5.39 86.31 0.46 2.38 16 14 C -0.10 -2.51 4.84 30.60 0.15 -2.36 16 15 C -0.09 -2.02 3.12 -9.67 -0.03 -2.05 16 16 C -0.10 -2.15 5.87 30.53 0.18 -1.97 16 17 C -0.18 -3.22 10.78 26.27 0.28 -2.93 16 18 C -0.17 -3.03 10.77 26.27 0.28 -2.75 16 19 C -0.10 -1.88 6.38 30.54 0.19 -1.68 16 20 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 21 H 0.05 1.73 7.60 -2.39 -0.02 1.71 16 22 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.34 14.16 8.35 -89.69 -0.75 13.41 16 25 H 0.07 2.14 7.16 -2.39 -0.02 2.12 16 26 H 0.01 0.46 8.05 -2.39 -0.02 0.44 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.82 7.92 -2.39 -0.02 1.81 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.63 7.74 -2.39 -0.02 1.61 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.47 7.89 -2.39 -0.02 1.45 16 Total: -1.00 -62.78 282.41 2.28 -60.50 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.27 Total: 18.98 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 2.98 Total: -35.55 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -2.82 Total: -90.01 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.85 Total: 46.07 kcal Total: -62.78 2.28 -60.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724205433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.856 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds