Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.51269 * 120.84865 * 2 1 4 4 C 1.53225 * 108.53793 * 128.92744 * 3 2 1 5 5 C 1.52955 * 109.40795 * 54.62879 * 4 3 2 6 6 C 1.53001 * 109.36080 * 176.33041 * 5 4 3 7 7 N 1.46494 * 109.47164 * 295.32298 * 6 5 4 8 8 C 1.46496 * 120.00607 * 89.99546 * 7 6 5 9 9 C 1.36944 * 119.99760 * 269.99611 * 7 6 5 10 10 H 1.08007 * 120.00056 * 20.06794 * 9 7 6 11 11 C 1.38807 * 119.99985 * 200.07031 * 9 7 6 12 12 N 1.31616 * 120.00510 * 14.21783 * 11 9 7 13 13 Si 1.86802 * 119.99696 * 194.21706 * 11 9 7 14 14 H 1.48496 * 109.47358 * 90.00044 * 13 11 9 15 15 H 1.48506 * 109.47317 * 209.99810 * 13 11 9 16 16 H 1.48501 * 109.47590 * 329.99786 * 13 11 9 17 17 C 1.52962 * 109.81610 * 296.40503 * 5 4 3 18 18 C 1.51274 * 120.85488 * 180.28143 * 2 1 3 19 19 H 1.08002 * 119.99573 * 179.71989 * 1 2 3 20 20 H 1.07991 * 120.00745 * 359.72278 * 1 2 3 21 21 H 1.09005 * 109.62656 * 248.64507 * 3 2 1 22 22 H 1.09001 * 109.62436 * 9.21207 * 3 2 1 23 23 H 1.09006 * 109.48349 * 294.64423 * 4 3 2 24 24 H 1.09006 * 109.48347 * 174.61173 * 4 3 2 25 25 H 1.08998 * 109.41233 * 56.50641 * 5 4 3 26 26 H 1.09006 * 109.46670 * 55.31861 * 6 5 4 27 27 H 1.08997 * 109.47184 * 175.31356 * 6 5 4 28 28 H 1.09003 * 109.47092 * 95.02318 * 8 7 6 29 29 H 1.09000 * 109.47329 * 215.02651 * 8 7 6 30 30 H 1.08999 * 109.47064 * 335.02712 * 8 7 6 31 31 H 0.97000 * 120.00160 * 180.02562 * 12 11 9 32 32 H 1.09004 * 109.48101 * 303.61340 * 17 5 4 33 33 H 1.09002 * 109.49211 * 183.58324 * 17 5 4 34 34 H 1.09000 * 109.62046 * 350.78707 * 18 2 1 35 35 H 1.08996 * 109.62649 * 111.16415 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1191 1.2488 1.1301 5 6 3.9848 -0.0022 0.9724 6 6 5.0742 -0.0040 2.0467 7 7 5.9754 1.1304 1.8301 8 6 5.6946 2.4207 2.4646 9 6 7.0804 0.9848 1.0345 10 1 7.1288 0.1760 0.3202 11 6 8.1384 1.8764 1.1460 12 7 8.2146 2.6806 2.1851 13 14 9.4540 1.9350 -0.1788 14 1 9.0621 2.9158 -1.2227 15 1 10.7471 2.3453 0.4253 16 1 9.5990 0.5905 -0.7925 17 6 3.1192 -1.2543 1.1240 18 6 2.0858 -1.2986 -0.0064 19 1 -0.5399 -0.9354 -0.0046 20 1 -0.5401 0.9351 0.0045 21 1 2.5943 1.4213 -0.9562 22 1 1.4032 2.1326 0.1644 23 1 2.6056 1.2169 2.0912 24 1 3.7507 2.1361 1.0846 25 1 4.4487 0.0002 -0.0139 26 1 4.6137 0.0806 3.0311 27 1 5.6399 -0.9338 1.9890 28 1 6.2493 2.4939 3.4000 29 1 5.9989 3.2274 1.7976 30 1 4.6268 2.5008 2.6681 31 1 8.9537 3.3040 2.2628 32 1 2.6057 -1.2270 2.0852 33 1 3.7507 -2.1413 1.0743 34 1 1.4034 -2.1334 0.1539 35 1 2.5917 -1.4181 -0.9644 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724594444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = 18.046315 kcal Electronic energy + Delta-G solvation = -14211.252417 eV Core-core repulsion = 12016.459428 eV Total energy + Delta-G solvation = -2194.792989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.51809 -35.49419 -32.78238 -30.87060 -30.42666 -27.29179 -25.82995 -23.87738 -22.55928 -20.87011 -19.73378 -18.08751 -16.53167 -14.92619 -14.66387 -14.61361 -13.91507 -13.67824 -13.42832 -13.00759 -12.68355 -12.24617 -11.99238 -11.50843 -11.37675 -10.98191 -10.85907 -10.67046 -10.60198 -10.41211 -10.07228 -10.06671 -9.76913 -9.65240 -9.49173 -8.83735 -8.44777 -6.66294 -5.64528 -3.07908 2.41678 3.42115 3.48394 3.49622 4.56034 4.88201 5.04454 5.29583 5.45245 5.49686 5.55640 5.65786 5.77123 5.82318 5.89083 5.97293 6.04770 6.19516 6.26609 6.37705 6.47490 6.57663 6.62743 6.68643 6.82471 6.89500 7.03828 7.04848 7.16410 7.47267 7.79918 7.88222 8.46891 9.32223 9.97240 10.45413 11.40300 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047490 B = 0.007723 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.453511 B = 3624.801476 C = 3721.378621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.102 4.102 3 C -0.089 4.089 4 C -0.106 4.106 5 C -0.108 4.108 6 C 0.156 3.844 7 N -0.603 5.603 8 C 0.161 3.839 9 C -0.248 4.248 10 H 0.068 0.932 11 C -0.003 4.003 12 N -0.911 5.911 13 Si 0.902 3.098 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.280 1.280 17 C -0.109 4.109 18 C -0.086 4.086 19 H 0.092 0.908 20 H 0.093 0.907 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.025 0.975 29 H 0.041 0.959 30 H 0.002 0.998 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 -4.786 -2.823 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.143 4.143 5 C -0.129 4.129 6 C 0.029 3.971 7 N -0.325 5.325 8 C 0.017 3.983 9 C -0.378 4.378 10 H 0.086 0.914 11 C -0.200 4.200 12 N -0.557 5.557 13 Si 0.732 3.268 14 H -0.217 1.217 15 H -0.219 1.219 16 H -0.206 1.206 17 C -0.147 4.147 18 C -0.124 4.124 19 H 0.110 0.890 20 H 0.111 0.889 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.920 -4.649 -2.756 13.088 hybrid contribution 0.707 0.136 -0.736 1.030 sum -11.213 -4.513 -3.492 12.581 Atomic orbital electron populations 1.23499 0.95042 1.01217 1.05834 1.22119 0.94894 0.96444 0.96701 1.20887 0.97682 0.93820 1.00202 1.21622 0.96124 0.99969 0.96573 1.21819 0.96143 0.92794 1.02187 1.20757 0.90590 0.91370 0.94389 1.43894 1.25534 1.06296 1.56804 1.20863 0.92777 0.87224 0.97446 1.19218 0.93761 1.12658 1.12151 0.91436 1.24941 0.97427 1.00273 0.97369 1.70095 1.32062 1.25970 1.27527 0.86284 0.81264 0.77726 0.81476 1.21651 1.21858 1.20591 1.21566 0.96702 0.98826 0.97597 1.20829 0.97606 0.94164 0.99754 0.88997 0.88895 0.91119 0.92099 0.93086 0.90249 0.91343 0.94875 0.93756 0.95665 0.94015 0.97935 0.93907 0.92442 0.92091 0.92088 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.65 13.99 29.02 0.41 -2.24 16 2 C -0.10 -1.38 5.35 -100.50 -0.54 -1.91 16 3 C -0.09 -1.30 6.03 -27.49 -0.17 -1.46 16 4 C -0.11 -1.78 4.35 -26.64 -0.12 -1.90 16 5 C -0.11 -1.91 2.29 -90.66 -0.21 -2.12 16 6 C 0.16 3.26 5.13 -4.04 -0.02 3.24 16 7 N -0.60 -15.31 2.74 -181.12 -0.50 -15.80 16 8 C 0.16 4.03 7.84 59.84 0.47 4.50 16 9 C -0.25 -6.92 9.68 -15.06 -0.15 -7.06 16 10 H 0.07 1.84 7.87 -52.48 -0.41 1.43 16 11 C 0.00 -0.07 5.08 -17.43 -0.09 -0.16 16 12 N -0.91 -27.09 10.61 55.49 0.59 -26.51 16 13 Si 0.90 22.24 29.58 -169.99 -5.03 17.21 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C -0.11 -1.58 5.21 -26.64 -0.14 -1.72 16 18 C -0.09 -1.13 6.03 -27.49 -0.17 -1.30 16 19 H 0.09 0.99 7.92 -52.49 -0.42 0.58 16 20 H 0.09 1.04 7.92 -52.49 -0.42 0.63 16 21 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.08 1.52 5.66 -51.93 -0.29 1.23 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 28 H 0.03 0.69 7.42 -51.93 -0.39 0.30 16 29 H 0.04 1.12 7.17 -51.93 -0.37 0.75 16 30 H 0.00 0.05 6.15 -51.93 -0.32 -0.27 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -29.29 274.41 -7.46 -36.75 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.94 Total: -3.66 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.71 Total: -12.13 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.09 Total: -42.31 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.29 -7.46 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724594444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.796 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds