Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.51269 * 120.84865 * 2 1 4 4 C 1.53225 * 108.53793 * 128.92744 * 3 2 1 5 5 C 1.52955 * 109.40795 * 54.62879 * 4 3 2 6 6 C 1.53001 * 109.36080 * 176.33041 * 5 4 3 7 7 N 1.46494 * 109.47164 * 295.32298 * 6 5 4 8 8 C 1.46496 * 120.00607 * 89.99546 * 7 6 5 9 9 C 1.36944 * 119.99760 * 269.99611 * 7 6 5 10 10 H 1.08007 * 120.00056 * 20.06794 * 9 7 6 11 11 C 1.38807 * 119.99985 * 200.07031 * 9 7 6 12 12 N 1.31616 * 120.00510 * 14.21783 * 11 9 7 13 13 Si 1.86802 * 119.99696 * 194.21706 * 11 9 7 14 14 H 1.48496 * 109.47358 * 90.00044 * 13 11 9 15 15 H 1.48506 * 109.47317 * 209.99810 * 13 11 9 16 16 H 1.48501 * 109.47590 * 329.99786 * 13 11 9 17 17 C 1.52962 * 109.81610 * 296.40503 * 5 4 3 18 18 C 1.51274 * 120.85488 * 180.28143 * 2 1 3 19 19 H 1.08002 * 119.99573 * 179.71989 * 1 2 3 20 20 H 1.07991 * 120.00745 * 359.72278 * 1 2 3 21 21 H 1.09005 * 109.62656 * 248.64507 * 3 2 1 22 22 H 1.09001 * 109.62436 * 9.21207 * 3 2 1 23 23 H 1.09006 * 109.48349 * 294.64423 * 4 3 2 24 24 H 1.09006 * 109.48347 * 174.61173 * 4 3 2 25 25 H 1.08998 * 109.41233 * 56.50641 * 5 4 3 26 26 H 1.09006 * 109.46670 * 55.31861 * 6 5 4 27 27 H 1.08997 * 109.47184 * 175.31356 * 6 5 4 28 28 H 1.09003 * 109.47092 * 95.02318 * 8 7 6 29 29 H 1.09000 * 109.47329 * 215.02651 * 8 7 6 30 30 H 1.08999 * 109.47064 * 335.02712 * 8 7 6 31 31 H 0.97000 * 120.00160 * 180.02562 * 12 11 9 32 32 H 1.09004 * 109.48101 * 303.61340 * 17 5 4 33 33 H 1.09002 * 109.49211 * 183.58324 * 17 5 4 34 34 H 1.09000 * 109.62046 * 350.78707 * 18 2 1 35 35 H 1.08996 * 109.62649 * 111.16415 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1191 1.2488 1.1301 5 6 3.9848 -0.0022 0.9724 6 6 5.0742 -0.0040 2.0467 7 7 5.9754 1.1304 1.8301 8 6 5.6946 2.4207 2.4646 9 6 7.0804 0.9848 1.0345 10 1 7.1288 0.1760 0.3202 11 6 8.1384 1.8764 1.1460 12 7 8.2146 2.6806 2.1851 13 14 9.4540 1.9350 -0.1788 14 1 9.0621 2.9158 -1.2227 15 1 10.7471 2.3453 0.4253 16 1 9.5990 0.5905 -0.7925 17 6 3.1192 -1.2543 1.1240 18 6 2.0858 -1.2986 -0.0064 19 1 -0.5399 -0.9354 -0.0046 20 1 -0.5401 0.9351 0.0045 21 1 2.5943 1.4213 -0.9562 22 1 1.4032 2.1326 0.1644 23 1 2.6056 1.2169 2.0912 24 1 3.7507 2.1361 1.0846 25 1 4.4487 0.0002 -0.0139 26 1 4.6137 0.0806 3.0311 27 1 5.6399 -0.9338 1.9890 28 1 6.2493 2.4939 3.4000 29 1 5.9989 3.2274 1.7976 30 1 4.6268 2.5008 2.6681 31 1 8.9537 3.3040 2.2628 32 1 2.6057 -1.2270 2.0852 33 1 3.7507 -2.1413 1.0743 34 1 1.4034 -2.1334 0.1539 35 1 2.5917 -1.4181 -0.9644 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724594444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = 2.657450 kcal Electronic energy + Delta-G solvation = -14211.919728 eV Core-core repulsion = 12016.459428 eV Total energy + Delta-G solvation = -2195.460300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81453 -37.25764 -34.34944 -32.50155 -31.82350 -28.81192 -27.87443 -25.44226 -23.75579 -22.64105 -21.18037 -19.20413 -18.61198 -16.89052 -15.97380 -15.65149 -15.53085 -15.49026 -14.75490 -14.48782 -14.20423 -13.91651 -13.24095 -13.08465 -12.92322 -12.75656 -12.45281 -12.43886 -12.20311 -11.94661 -11.85156 -11.68658 -11.55691 -11.16789 -10.81761 -10.58136 -9.84088 -8.73886 -7.80073 -5.25922 1.44044 1.45482 1.46940 1.55555 2.52073 3.31575 3.69928 3.85261 3.95703 4.11796 4.32962 4.39320 4.50984 4.61847 4.64279 4.76791 4.85278 4.89843 5.01374 5.04271 5.11610 5.14686 5.20548 5.25384 5.36620 5.40304 5.53777 5.63170 5.67851 5.73491 5.85590 6.08559 6.34394 7.17797 7.92155 8.34866 9.22963 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047490 B = 0.007723 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.453511 B = 3624.801476 C = 3721.378621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.084 4.084 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.153 3.847 7 N -0.618 5.618 8 C 0.180 3.820 9 C -0.256 4.256 10 H 0.069 0.931 11 C -0.059 4.059 12 N -0.943 5.943 13 Si 0.967 3.033 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.268 1.268 17 C -0.103 4.103 18 C -0.082 4.082 19 H 0.110 0.890 20 H 0.101 0.899 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.039 0.961 28 H -0.004 1.004 29 H 0.013 0.987 30 H 0.035 0.965 31 H 0.247 0.753 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -5.996 -3.592 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.139 4.139 5 C -0.118 4.118 6 C 0.027 3.973 7 N -0.341 5.341 8 C 0.035 3.965 9 C -0.386 4.386 10 H 0.087 0.913 11 C -0.253 4.253 12 N -0.591 5.591 13 Si 0.795 3.205 14 H -0.215 1.215 15 H -0.222 1.222 16 H -0.193 1.193 17 C -0.141 4.141 18 C -0.119 4.119 19 H 0.128 0.872 20 H 0.120 0.880 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.015 0.985 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.702 -5.893 -3.535 15.329 hybrid contribution 1.160 0.483 -0.470 1.341 sum -12.543 -5.409 -4.004 14.234 Atomic orbital electron populations 1.23737 0.94478 1.02545 1.02737 1.22055 0.95451 0.95739 0.99366 1.20798 0.97299 0.95430 0.98592 1.21523 0.96246 0.98117 0.98056 1.21595 0.95631 0.95178 0.99370 1.20962 0.90715 0.89553 0.96080 1.44133 1.25816 1.07546 1.56632 1.20578 0.94122 0.86600 0.95241 1.19537 0.94382 1.12416 1.12248 0.91287 1.25719 0.99784 1.00398 0.99405 1.70263 1.32739 1.26802 1.29246 0.85262 0.78340 0.78063 0.78807 1.21485 1.22169 1.19297 1.21496 0.96742 0.96976 0.98856 1.20799 0.97425 0.94892 0.98790 0.87200 0.88044 0.92131 0.90905 0.92418 0.93189 0.93620 0.93873 0.94246 0.98532 0.96780 0.94665 0.94423 0.91631 0.91520 0.89800 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.01 13.99 67.79 0.95 -3.06 16 2 C -0.13 -3.05 5.35 -16.12 -0.09 -3.13 16 3 C -0.08 -2.32 6.03 30.10 0.18 -2.14 16 4 C -0.10 -3.34 4.35 30.65 0.13 -3.21 16 5 C -0.10 -3.34 2.29 -10.82 -0.02 -3.36 16 6 C 0.15 6.31 5.13 86.38 0.44 6.76 16 7 N -0.62 -31.81 2.74 -726.95 -1.99 -33.81 16 8 C 0.18 9.18 7.84 127.77 1.00 10.18 16 9 C -0.26 -14.41 9.68 84.03 0.81 -13.60 16 10 H 0.07 3.79 7.87 -2.91 -0.02 3.77 16 11 C -0.06 -3.39 5.08 84.86 0.43 -2.96 16 12 N -0.94 -57.50 10.61 21.65 0.23 -57.27 16 13 Si 0.97 46.25 29.58 68.60 2.03 48.28 16 14 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 15 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 C -0.10 -2.75 5.21 30.66 0.16 -2.59 16 18 C -0.08 -1.90 6.03 30.10 0.18 -1.72 16 19 H 0.11 1.85 7.92 -2.91 -0.02 1.83 16 20 H 0.10 1.88 7.92 -2.92 -0.02 1.86 16 21 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.07 1.81 7.89 -2.39 -0.02 1.79 16 23 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16 24 H 0.05 1.92 5.66 -2.38 -0.01 1.90 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.68 8.07 -2.38 -0.02 1.66 16 27 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 28 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 29 H 0.01 0.76 7.17 -2.39 -0.02 0.74 16 30 H 0.04 1.53 6.15 -2.39 -0.01 1.52 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.59 7.89 -2.39 -0.02 1.57 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -62.87 274.41 5.47 -57.39 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.03 Total: 4.24 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.18 Total: -18.83 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -1.76 Total: -91.08 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -62.87 5.47 -57.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724594444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.052 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds