Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29503 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47089 * 268.05256 * 3 2 1 5 5 H 1.48505 * 109.47164 * 28.05008 * 3 2 1 6 6 H 1.48500 * 109.47074 * 148.04602 * 3 2 1 7 7 C 1.46544 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 355.54125 * 7 2 1 9 9 C 1.40363 * 119.99890 * 175.54363 * 7 2 1 10 10 C 1.41300 * 120.69908 * 322.90785 * 9 7 2 11 11 N 1.31505 * 120.19334 * 180.02562 * 10 9 7 12 12 O 1.41596 * 119.07364 * 180.02562 * 11 10 9 13 13 C 1.32341 * 121.86173 * 359.72615 * 11 10 9 14 14 C 1.38693 * 121.42711 * 0.54582 * 13 11 10 15 15 C 1.36900 * 119.62705 * 359.46909 * 14 13 11 16 16 N 1.48011 * 120.85911 * 180.23309 * 15 14 13 17 17 O 1.31701 * 119.99966 * 354.67733 * 16 15 14 18 18 O 1.31699 * 120.00354 * 174.68371 * 16 15 14 19 19 H 0.96997 * 120.00188 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.90267 * 0.02562 * 10 9 7 21 21 H 1.07997 * 119.29111 * 180.26763 * 13 11 10 22 22 H 1.08009 * 120.18721 * 179.74686 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 2.5177 2.0226 -1.3993 5 1 1.4064 2.6643 0.6584 6 1 3.5053 1.4525 0.7410 7 6 2.0278 -1.2691 -0.0006 8 1 1.4902 -2.2030 0.0717 9 6 3.4282 -1.2708 -0.0950 10 6 4.0973 -0.3314 -0.9113 11 7 5.4098 -0.3424 -0.9929 12 8 6.0559 0.6101 -1.8176 13 6 6.1442 -1.2147 -0.3213 14 6 5.5625 -2.1719 0.4966 15 6 4.2002 -2.2145 0.6254 16 7 3.5510 -3.2211 1.4948 17 8 4.2753 -4.1563 2.0740 18 8 2.2490 -3.1819 1.6892 19 1 -0.4850 0.8400 -0.0004 20 1 3.5292 0.3977 -1.4699 21 1 7.2196 -1.1836 -0.4157 22 1 6.1810 -2.8769 1.0324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725239957.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = 63.073751 kcal Electronic energy + Delta-G solvation = -13508.497179 eV Core-core repulsion = 10842.731532 eV Total energy + Delta-G solvation = -2665.765648 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.38324 -37.56753 -35.17855 -33.63404 -33.22593 -31.78585 -29.47664 -27.24615 -25.43868 -23.10061 -21.80217 -19.10922 -17.91501 -17.34766 -16.55859 -15.77316 -15.55544 -15.04125 -14.80093 -14.21984 -13.75646 -13.01580 -12.42997 -12.06032 -11.88448 -11.65953 -10.76132 -10.57644 -10.18308 -10.09644 -9.73534 -9.60388 -9.02717 -8.78417 -8.16762 -8.08838 -5.79886 0.21551 1.43062 1.85347 2.36661 2.48318 2.53898 2.62191 3.16411 3.34893 3.39169 4.03077 4.97312 5.19637 5.28202 5.34448 5.67358 5.83963 6.15535 6.25417 6.77392 6.90777 7.13029 7.39684 7.59072 7.85999 8.05611 8.67832 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.018985 C = 0.011065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.785169 B = 1474.486019 C = 2529.908881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.679 5.679 2 C 0.054 3.946 3 Si 0.909 3.091 4 H -0.240 1.240 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.242 4.242 8 H 0.147 0.853 9 C 0.020 3.980 10 C 0.016 3.984 11 N -0.062 5.062 12 O -0.564 6.564 13 C -0.094 4.094 14 C 0.007 3.993 15 C -0.096 4.096 16 N 0.031 4.969 17 O -0.303 6.303 18 O -0.228 6.228 19 H 0.319 0.681 20 H 0.171 0.829 21 H 0.170 0.830 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 2.126 0.408 2.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.297 5.297 2 C -0.182 4.182 3 Si 0.729 3.271 4 H -0.164 1.164 5 H -0.185 1.185 6 H -0.158 1.158 7 C -0.269 4.269 8 H 0.164 0.836 9 C 0.013 3.987 10 C -0.149 4.149 11 N 0.264 4.736 12 O -0.621 6.621 13 C -0.229 4.229 14 C -0.013 4.013 15 C -0.197 4.197 16 N 0.469 4.531 17 O -0.459 6.459 18 O -0.401 6.401 19 H 0.133 0.867 20 H 0.188 0.812 21 H 0.188 0.812 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.019 2.541 0.065 2.542 hybrid contribution 0.056 0.422 0.119 0.442 sum 0.075 2.963 0.185 2.970 Atomic orbital electron populations 1.68842 1.09209 1.34283 1.17364 1.28183 0.95452 1.02919 0.91692 0.86283 0.81310 0.77190 0.82267 1.16440 1.18481 1.15776 1.22265 0.89123 0.96748 1.18790 0.83577 1.17253 0.94204 0.92239 0.94965 1.22797 0.84076 1.04289 1.03694 1.42676 1.04247 1.12271 1.14397 1.97545 1.72911 1.39461 1.52207 1.21537 0.98874 0.97653 1.04851 1.20771 0.92837 0.94841 0.92896 1.19798 0.91577 1.01971 1.06394 1.49636 1.02409 1.00909 1.00126 1.96144 1.62911 1.30527 1.56290 1.96163 0.90889 1.81086 1.71989 0.86721 0.81182 0.81226 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -12.82 13.89 55.99 0.78 -12.05 14 2 C 0.05 1.05 5.68 -15.19 -0.09 0.96 14 3 Si 0.91 15.70 24.59 -169.99 -4.18 11.52 14 4 H -0.24 -4.07 6.73 56.52 0.38 -3.69 14 5 H -0.26 -4.11 7.11 56.52 0.40 -3.70 14 6 H -0.23 -4.48 6.67 56.52 0.38 -4.10 14 7 C -0.24 -5.15 8.47 -35.44 -0.30 -5.45 14 8 H 0.15 3.33 6.22 -52.49 -0.33 3.01 14 9 C 0.02 0.43 5.15 -106.65 -0.55 -0.12 14 10 C 0.02 0.33 7.77 -16.53 -0.13 0.21 14 11 N -0.06 -1.42 3.57 -12.31 -0.04 -1.46 14 12 O -0.56 -15.28 20.05 -11.47 -0.23 -15.51 14 13 C -0.09 -1.84 10.68 -17.16 -0.18 -2.03 14 14 C 0.01 0.12 9.59 -39.90 -0.38 -0.26 14 15 C -0.10 -2.09 6.95 -79.15 -0.55 -2.64 14 16 N 0.03 0.75 4.98 34.35 0.17 0.92 14 17 O -0.30 -7.25 19.24 -31.57 -0.61 -7.86 14 18 O -0.23 -5.63 16.48 -31.57 -0.52 -6.15 14 19 H 0.32 5.07 8.27 -40.82 -0.34 4.74 14 20 H 0.17 3.43 4.73 -52.49 -0.25 3.19 14 21 H 0.17 2.84 8.06 -52.49 -0.42 2.42 14 22 H 0.16 2.53 7.65 -52.48 -0.40 2.13 14 LS Contribution 212.52 15.07 3.20 3.20 Total: -1.00 -28.54 212.52 -4.19 -32.73 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -0.58 Total: 3.99 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.18 Total: -9.34 kcal Atomic # 7 Polarization: -13.49 SS G_CDS: 0.90 Total: -12.59 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.36 Total: -29.52 kcal Atomic # 14 Polarization: 15.70 SS G_CDS: -4.18 Total: 11.52 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.54 -4.19 -32.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725239957.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.799 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds