Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29503 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47089 * 268.05256 * 3 2 1 5 5 H 1.48505 * 109.47164 * 28.05008 * 3 2 1 6 6 H 1.48500 * 109.47074 * 148.04602 * 3 2 1 7 7 C 1.46544 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 355.54125 * 7 2 1 9 9 C 1.40363 * 119.99890 * 175.54363 * 7 2 1 10 10 C 1.41300 * 120.69908 * 322.90785 * 9 7 2 11 11 N 1.31505 * 120.19334 * 180.02562 * 10 9 7 12 12 O 1.41596 * 119.07364 * 180.02562 * 11 10 9 13 13 C 1.32341 * 121.86173 * 359.72615 * 11 10 9 14 14 C 1.38693 * 121.42711 * 0.54582 * 13 11 10 15 15 C 1.36900 * 119.62705 * 359.46909 * 14 13 11 16 16 N 1.48011 * 120.85911 * 180.23309 * 15 14 13 17 17 O 1.31701 * 119.99966 * 354.67733 * 16 15 14 18 18 O 1.31699 * 120.00354 * 174.68371 * 16 15 14 19 19 H 0.96997 * 120.00188 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.90267 * 0.02562 * 10 9 7 21 21 H 1.07997 * 119.29111 * 180.26763 * 13 11 10 22 22 H 1.08009 * 120.18721 * 179.74686 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 2.5177 2.0226 -1.3993 5 1 1.4064 2.6643 0.6584 6 1 3.5053 1.4525 0.7410 7 6 2.0278 -1.2691 -0.0006 8 1 1.4902 -2.2030 0.0717 9 6 3.4282 -1.2708 -0.0950 10 6 4.0973 -0.3314 -0.9113 11 7 5.4098 -0.3424 -0.9929 12 8 6.0559 0.6101 -1.8176 13 6 6.1442 -1.2147 -0.3213 14 6 5.5625 -2.1719 0.4966 15 6 4.2002 -2.2145 0.6254 16 7 3.5510 -3.2211 1.4948 17 8 4.2753 -4.1563 2.0740 18 8 2.2490 -3.1819 1.6892 19 1 -0.4850 0.8400 -0.0004 20 1 3.5292 0.3977 -1.4699 21 1 7.2196 -1.1836 -0.4157 22 1 6.1810 -2.8769 1.0324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725239957.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = 44.052171 kcal Electronic energy + Delta-G solvation = -13509.322017 eV Core-core repulsion = 10842.731532 eV Total energy + Delta-G solvation = -2666.590485 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.07349 -39.26647 -36.83568 -35.31738 -34.94237 -33.44109 -31.32572 -28.95080 -27.16591 -24.74724 -23.48757 -20.75703 -19.57584 -19.04642 -18.22999 -17.42077 -17.16990 -16.72872 -16.40111 -15.93788 -15.27603 -14.55636 -14.01075 -13.70687 -13.39978 -13.27578 -12.27284 -12.14818 -11.85879 -11.70049 -11.45768 -11.38402 -10.74854 -10.62991 -10.04300 -9.71780 -7.49281 -1.56887 -0.15465 0.12129 0.70134 1.04539 1.12408 1.26756 1.66665 1.75460 1.84028 2.37955 3.32178 3.57505 3.69216 3.76669 4.05158 4.31172 4.59084 4.64721 5.10662 5.20936 5.42832 5.64771 5.91916 6.06280 6.30531 7.19219 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.018985 C = 0.011065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.785169 B = 1474.486019 C = 2529.908881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.676 5.676 2 C 0.034 3.966 3 Si 0.943 3.057 4 H -0.230 1.230 5 H -0.227 1.227 6 H -0.261 1.261 7 C -0.213 4.213 8 H 0.128 0.872 9 C -0.003 4.003 10 C 0.039 3.961 11 N -0.085 5.085 12 O -0.608 6.608 13 C -0.079 4.079 14 C 0.019 3.981 15 C -0.103 4.103 16 N 0.035 4.965 17 O -0.336 6.336 18 O -0.290 6.290 19 H 0.341 0.659 20 H 0.184 0.816 21 H 0.201 0.799 22 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 3.691 -0.070 3.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.296 5.296 2 C -0.203 4.203 3 Si 0.761 3.239 4 H -0.154 1.154 5 H -0.150 1.150 6 H -0.185 1.185 7 C -0.242 4.242 8 H 0.146 0.854 9 C -0.010 4.010 10 C -0.126 4.126 11 N 0.238 4.762 12 O -0.663 6.663 13 C -0.213 4.213 14 C 0.000 4.000 15 C -0.208 4.208 16 N 0.454 4.546 17 O -0.483 6.483 18 O -0.448 6.448 19 H 0.157 0.843 20 H 0.200 0.800 21 H 0.218 0.782 22 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.113 4.027 -0.346 4.044 hybrid contribution -0.089 0.096 0.143 0.194 sum -0.202 4.123 -0.203 4.133 Atomic orbital electron populations 1.68768 1.09597 1.36556 1.14636 1.28544 0.95982 1.03569 0.92197 0.85806 0.79800 0.75643 0.82670 1.15427 1.14989 1.18539 1.22497 0.89496 0.97336 1.14843 0.85414 1.17263 0.94221 0.93168 0.96320 1.23014 0.84079 1.03155 1.02357 1.42830 1.04662 1.13113 1.15556 1.97523 1.73283 1.41319 1.54166 1.22103 1.00234 0.96021 1.02961 1.21059 0.91915 0.94793 0.92240 1.20118 0.92770 1.01593 1.06336 1.49697 1.02131 1.01567 1.01192 1.96098 1.62785 1.31575 1.57866 1.96129 0.91768 1.82249 1.74614 0.84343 0.79972 0.78224 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -23.66 13.89 23.21 0.32 -23.34 14 2 C 0.03 1.22 5.68 87.20 0.50 1.72 14 3 Si 0.94 29.30 24.59 68.60 1.69 30.99 14 4 H -0.23 -6.88 6.73 99.48 0.67 -6.21 14 5 H -0.23 -5.97 7.11 99.48 0.71 -5.26 14 6 H -0.26 -9.36 6.67 99.48 0.66 -8.70 14 7 C -0.21 -8.89 8.47 24.95 0.21 -8.67 14 8 H 0.13 5.87 6.22 -2.91 -0.02 5.86 14 9 C 0.00 -0.13 5.15 -21.18 -0.11 -0.24 14 10 C 0.04 1.61 7.77 85.49 0.66 2.28 14 11 N -0.09 -3.74 3.57 -192.87 -0.69 -4.43 14 12 O -0.61 -32.06 20.05 -38.77 -0.78 -32.84 14 13 C -0.08 -2.90 10.68 84.73 0.91 -2.00 14 14 C 0.02 0.69 9.59 22.06 0.21 0.90 14 15 C -0.10 -4.40 6.95 36.90 0.26 -4.15 14 16 N 0.03 1.68 4.98 -45.23 -0.23 1.46 14 17 O -0.34 -16.39 19.24 3.51 0.07 -16.32 14 18 O -0.29 -14.88 16.48 3.52 0.06 -14.83 14 19 H 0.34 9.59 8.27 -92.71 -0.77 8.83 14 20 H 0.18 6.91 4.73 -2.91 -0.01 6.90 14 21 H 0.20 6.00 8.06 -2.91 -0.02 5.97 14 22 H 0.19 5.54 7.65 -2.91 -0.02 5.51 14 Total: -1.00 -60.84 212.52 4.27 -56.57 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.20 Total: 12.90 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 2.64 Total: -10.16 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: -0.59 Total: -26.31 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -0.65 Total: -63.98 kcal Atomic # 14 Polarization: 29.30 SS G_CDS: 1.69 Total: 30.99 kcal Total: -60.84 4.27 -56.57 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725239957.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.618 kcal (2) G-P(sol) polarization free energy of solvation -60.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds