Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47080 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.46846 * 209.99784 * 9 7 5 12 12 H 1.48499 * 109.47093 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.46897 * 111.00355 * 84.99974 * 13 2 1 15 15 C 1.50696 * 109.47624 * 179.97438 * 14 13 2 16 16 C 1.30998 * 120.00020 * 124.99537 * 15 14 13 17 17 C 1.50696 * 120.00020 * 180.02562 * 16 15 14 18 18 C 1.53001 * 117.49831 * 188.62461 * 17 16 15 19 19 C 1.52998 * 60.00150 * 252.51092 * 18 17 16 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 26 26 H 1.00901 * 110.99869 * 321.04664 * 13 2 1 27 27 H 1.09006 * 109.46948 * 300.00869 * 14 13 2 28 28 H 1.09006 * 109.47033 * 59.99701 * 14 13 2 29 29 H 1.08003 * 120.00241 * 305.00791 * 15 14 13 30 30 H 1.08003 * 119.99739 * 0.02562 * 16 15 14 31 31 H 1.09002 * 115.55439 * 334.33657 * 17 16 15 32 32 H 1.08994 * 117.50359 * 0.02562 * 18 17 16 33 33 H 1.09008 * 117.49853 * 145.02336 * 18 17 16 34 34 H 1.08998 * 117.50140 * 252.50863 * 19 18 17 35 35 H 1.09004 * 117.51512 * 107.47832 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 3.5763 -1.8378 3.2996 9 14 6.0920 -1.0612 2.4370 10 1 6.4698 0.1610 3.1912 11 1 6.6445 -2.2568 3.1229 12 1 6.6416 -0.9826 1.0597 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3469 15 6 2.5887 -0.5215 -3.5557 16 6 1.8882 -0.5262 -4.6626 17 6 2.3940 -1.2708 -5.8712 18 6 1.6400 -1.0752 -7.1881 19 6 1.5179 -2.3960 -6.4256 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 4.0607 -2.2445 4.0350 26 1 1.4496 -1.4979 -1.4100 27 1 1.0872 0.6163 -2.5525 28 1 2.7590 1.0462 -2.1182 29 1 3.5289 -1.0511 -3.5094 30 1 0.9481 0.0035 -4.7090 31 1 3.4748 -1.4018 -5.9244 32 1 0.7784 -0.4077 -7.1804 33 1 2.2248 -1.0773 -8.1080 34 1 2.0223 -3.2671 -6.8438 35 1 0.5758 -2.5979 -5.9158 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829173015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = 24.686593 kcal Electronic energy + Delta-G solvation = -13215.229910 eV Core-core repulsion = 11020.724864 eV Total energy + Delta-G solvation = -2194.505045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.85619 -36.75009 -33.67718 -32.23029 -29.57562 -27.21219 -24.94786 -22.88786 -22.48371 -21.15922 -19.84987 -19.29273 -16.20835 -15.85345 -15.15577 -14.49308 -14.39662 -14.00101 -13.58203 -12.61980 -12.52345 -12.29264 -11.83145 -11.70259 -11.66342 -11.37059 -11.22741 -10.98298 -10.77944 -10.57333 -10.46436 -10.24440 -10.00982 -9.25673 -8.93279 -8.68740 -8.21042 -7.52408 -5.83455 -3.80814 2.25544 3.42110 3.48018 3.53368 3.87637 4.54588 4.60751 4.82904 4.94000 5.02540 5.19007 5.40258 5.49013 5.53644 5.58548 5.74014 5.76454 5.90427 5.95587 5.97860 6.07691 6.09359 6.20187 6.46645 6.65307 6.83087 6.93295 7.07049 7.60905 7.74060 8.06907 8.11832 8.22883 8.65239 9.24460 9.80271 11.28796 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.005957 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.673082 B = 4699.047775 C = 5252.759851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.032 3.968 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.661 5.661 14 C 0.086 3.914 15 C -0.125 4.125 16 C -0.148 4.148 17 C -0.119 4.119 18 C -0.180 4.180 19 C -0.175 4.175 20 H 0.056 0.944 21 H 0.036 0.964 22 H 0.051 0.949 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.257 0.743 26 H 0.332 0.668 27 H 0.021 0.979 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 2.057 -16.232 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.526 4.526 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.290 5.290 14 C -0.043 4.043 15 C -0.144 4.144 16 C -0.167 4.167 17 C -0.137 4.137 18 C -0.217 4.217 19 C -0.212 4.212 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.248 2.050 -15.895 16.581 hybrid contribution 0.077 0.082 -0.092 0.145 sum -4.171 2.132 -15.987 16.659 Atomic orbital electron populations 1.22556 0.99584 1.01186 1.00553 1.21816 0.89865 0.98164 0.92274 0.91790 1.19121 0.96249 0.95417 0.89705 1.21157 0.91929 1.32722 1.06762 0.92384 1.25006 0.97989 0.95937 0.96069 1.69968 1.35165 1.37105 1.12389 0.86635 0.86462 0.77173 0.77934 1.21054 1.21554 1.19963 1.60523 1.57826 1.08519 1.02175 1.21038 0.98077 0.95581 0.89642 1.22915 0.99880 0.97987 0.93591 1.22124 0.99856 1.01123 0.93631 1.21186 0.97898 1.01507 0.93072 1.22948 1.03067 1.00358 0.95342 1.22941 1.02039 0.92345 1.03826 0.92461 0.94496 0.93036 0.96467 0.96491 0.93382 0.85080 0.96099 0.90513 0.86723 0.87745 0.87547 0.88882 0.88915 0.88774 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.16 37.16 0.34 -2.75 16 2 C 0.09 1.82 2.53 -67.71 -0.17 1.64 16 3 H 0.06 1.34 7.80 -51.93 -0.40 0.94 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.49 -14.00 8.84 -34.44 -0.30 -14.30 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.85 13.29 55.43 0.74 -27.11 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.66 -12.68 5.95 -107.99 -0.64 -13.32 16 14 C 0.09 1.37 5.92 -4.98 -0.03 1.34 16 15 C -0.13 -1.79 9.41 -36.03 -0.34 -2.13 16 16 C -0.15 -1.84 9.27 -36.03 -0.33 -2.18 16 17 C -0.12 -1.30 5.99 -91.77 -0.55 -1.85 16 18 C -0.18 -1.66 10.23 -26.73 -0.27 -1.93 16 19 C -0.17 -1.70 10.23 -26.73 -0.27 -1.98 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 22 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.33 6.03 8.46 -39.29 -0.33 5.70 16 27 H 0.02 0.31 7.09 -51.93 -0.37 -0.06 16 28 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.11 1.72 8.05 -52.48 -0.42 1.30 16 30 H 0.10 1.23 7.84 -52.48 -0.41 0.82 16 31 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 295.87 15.07 4.46 4.46 Total: -1.00 -30.32 295.87 -8.72 -39.04 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.09 Total: 1.61 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.16 Total: -22.08 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.09 Total: -40.43 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.32 -8.72 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.723 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds