Wall clock time and date at job start Mon Mar 30 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 112.79225 * 2 1 4 4 C 1.53516 * 113.47629 * 130.81261 * 2 1 3 5 5 C 1.53505 * 83.57740 * 140.78960 * 4 2 1 6 6 N 1.47479 * 87.93467 * 333.97434 * 5 4 2 7 7 C 1.46898 * 111.00091 * 138.70151 * 6 5 4 8 8 H 1.08997 * 109.35682 * 321.70462 * 7 6 5 9 9 C 1.52961 * 109.41176 * 81.53080 * 7 6 5 10 10 C 1.53223 * 109.40502 * 183.70436 * 9 7 6 11 11 C 1.51267 * 108.53765 * 305.37022 * 10 9 7 12 12 C 1.37876 * 120.85110 * 231.32500 * 11 10 9 13 13 N 1.31513 * 120.00093 * 5.66746 * 12 11 10 14 14 Si 1.86804 * 119.99900 * 185.66883 * 12 11 10 15 15 H 1.48500 * 109.46887 * 269.99980 * 14 12 11 16 16 H 1.48502 * 109.47308 * 29.99825 * 14 12 11 17 17 H 1.48502 * 109.47021 * 149.99892 * 14 12 11 18 18 C 1.51269 * 118.29844 * 51.59878 * 11 10 9 19 19 C 1.52957 * 109.41374 * 201.87891 * 7 6 5 20 20 H 1.08995 * 109.47313 * 190.80589 * 1 2 3 21 21 H 1.09000 * 109.47211 * 310.81448 * 1 2 3 22 22 H 1.09006 * 109.46899 * 70.80756 * 1 2 3 23 23 H 1.09007 * 114.16947 * 27.14004 * 4 2 1 24 24 H 1.09001 * 114.34019 * 254.45370 * 4 2 1 25 25 H 1.09000 * 113.47480 * 219.20801 * 5 4 2 26 26 H 1.08994 * 113.53404 * 88.75101 * 5 4 2 27 27 H 1.09000 * 109.48389 * 63.72392 * 9 7 6 28 28 H 1.09002 * 109.49151 * 303.69065 * 9 7 6 29 29 H 1.08998 * 109.63008 * 185.65728 * 10 9 7 30 30 H 1.08997 * 109.63093 * 65.08633 * 10 9 7 31 31 H 0.96999 * 119.99731 * 354.39673 * 13 12 11 32 32 H 1.09001 * 109.62687 * 68.11707 * 18 11 10 33 33 H 1.09007 * 109.62400 * 188.68749 * 18 11 10 34 34 H 1.08996 * 109.48931 * 296.27995 * 19 7 6 35 35 H 1.09005 * 109.48281 * 56.30655 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0048 0.0000 4 6 2.1415 -0.9203 1.0657 5 6 3.1572 -1.2395 -0.0401 6 7 2.1175 -0.8841 -1.0239 7 6 2.6852 -0.1030 -2.1309 8 1 3.4358 0.5842 -1.7405 9 6 3.3382 -1.0501 -3.1389 10 6 4.0103 -0.2309 -4.2457 11 6 2.9824 0.7037 -4.8440 12 6 2.7838 0.7568 -6.2074 13 7 3.4107 -0.0880 -6.9966 14 14 1.6243 2.0288 -6.9335 15 1 0.2528 1.4641 -7.0060 16 1 1.6163 3.2394 -6.0735 17 1 2.0822 2.3941 -8.2981 18 6 2.1822 1.5830 -3.9087 19 6 1.5724 0.6939 -2.8138 20 1 -0.3634 -1.0094 0.1927 21 1 -0.3634 0.6717 0.7778 22 1 -0.3633 0.3379 -0.9706 23 1 1.5076 -1.7617 1.3459 24 1 2.5647 -0.3962 1.9227 25 1 3.4463 -2.2899 -0.0741 26 1 4.0141 -0.5660 -0.0516 27 1 2.5772 -1.6965 -3.5763 28 1 4.0864 -1.6603 -2.6329 29 1 4.3897 -0.9003 -5.0177 30 1 4.8314 0.3492 -3.8246 31 1 4.0734 -0.6939 -6.6298 32 1 2.8370 2.3281 -3.4569 33 1 1.3865 2.0795 -4.4642 34 1 0.8532 0.0064 -3.2587 35 1 1.0690 1.3200 -2.0771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885364331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:50 Heat of formation + Delta-G solvation = 13.286140 kcal Electronic energy + Delta-G solvation = -14536.227934 eV Core-core repulsion = 12341.228528 eV Total energy + Delta-G solvation = -2194.999406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11333 -36.21824 -32.42971 -30.52306 -29.25018 -28.73059 -25.33138 -23.14664 -21.93035 -20.91624 -19.36340 -19.24415 -16.47440 -15.96044 -14.68800 -14.29582 -13.99241 -13.80736 -13.18549 -12.82498 -12.43688 -12.16251 -11.89927 -11.63322 -11.50505 -11.12765 -10.94535 -10.71419 -10.51849 -10.31963 -10.09203 -9.98113 -9.91764 -9.36485 -9.05392 -8.46234 -8.41101 -8.20260 -6.38989 -3.96622 3.41944 3.45220 3.61273 4.31076 4.50406 4.63658 5.00245 5.27256 5.46213 5.47967 5.53197 5.64572 5.75625 5.80557 5.92655 5.97447 6.08583 6.18852 6.19573 6.35897 6.53538 6.65583 6.72325 6.80891 6.89611 6.95948 7.03940 7.15953 7.31873 7.42957 7.65134 7.69368 8.13057 8.36362 8.92483 9.65647 10.98791 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047627 B = 0.009488 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.758365 B = 2950.538076 C = 3375.020909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.025 3.975 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.002 4.002 6 N -0.468 5.468 7 C 0.068 3.932 8 H 0.034 0.966 9 C -0.090 4.090 10 C 0.001 3.999 11 C -0.565 4.565 12 C 0.033 3.967 13 N -0.910 5.910 14 Si 1.064 2.936 15 H -0.285 1.285 16 H -0.284 1.284 17 H -0.288 1.288 18 C -0.007 4.007 19 C -0.099 4.099 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.025 0.975 29 H 0.037 0.963 30 H 0.002 0.998 31 H 0.271 0.729 32 H 0.008 0.992 33 H 0.028 0.972 34 H 0.057 0.943 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 0.431 12.904 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 H 0.089 0.911 4 C -0.182 4.182 5 C -0.131 4.131 6 N -0.191 5.191 7 C -0.040 4.040 8 H 0.052 0.948 9 C -0.129 4.129 10 C -0.037 4.037 11 C -0.584 4.584 12 C -0.172 4.172 13 N -0.546 5.546 14 Si 0.893 3.107 15 H -0.212 1.212 16 H -0.211 1.211 17 H -0.215 1.215 18 C -0.045 4.045 19 C -0.137 4.137 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.194 0.414 11.109 11.881 hybrid contribution 1.316 0.123 1.710 2.161 sum -2.877 0.537 12.819 13.148 Atomic orbital electron populations 1.21676 0.94004 1.01598 1.01791 1.23237 0.96623 0.96129 0.92483 0.91064 1.23247 0.98751 1.00025 0.96203 1.23636 0.94833 1.01886 0.92739 1.69022 1.17986 1.28772 1.03277 1.22067 0.95986 0.94240 0.91706 0.94844 1.21492 0.98186 0.97003 0.96184 1.19443 0.95187 0.95153 0.93913 1.21012 1.21903 1.22800 0.92700 1.25759 0.99628 0.98742 0.93060 1.70785 1.25162 1.19830 1.38864 0.83622 0.75818 0.75849 0.75425 1.21199 1.21053 1.21476 1.19703 0.95587 0.94783 0.94471 1.21727 0.96619 0.97945 0.97430 0.92361 0.92947 0.91945 0.89312 0.91413 0.90365 0.91903 0.92636 0.95594 0.94490 0.97987 0.91586 0.97378 0.95306 0.92429 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.79 37.16 0.36 -1.42 16 2 C 0.02 0.36 2.65 -71.43 -0.19 0.18 16 3 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 4 C -0.14 -1.79 8.00 -26.20 -0.21 -2.00 16 5 C 0.00 -0.03 7.32 -7.55 -0.06 -0.08 16 6 N -0.47 -8.22 5.93 -228.56 -1.35 -9.58 16 7 C 0.07 1.39 1.47 -67.76 -0.10 1.29 16 8 H 0.03 0.70 7.53 -51.93 -0.39 0.31 16 9 C -0.09 -2.04 5.43 -26.64 -0.14 -2.19 16 10 C 0.00 0.03 5.96 -27.49 -0.16 -0.13 16 11 C -0.57 -15.35 5.50 -98.92 -0.54 -15.90 16 12 C 0.03 0.93 5.46 -17.82 -0.10 0.83 16 13 N -0.91 -27.45 13.66 55.43 0.76 -26.70 16 14 Si 1.06 25.42 27.48 -169.99 -4.67 20.75 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.39 6.71 56.52 0.38 -6.01 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.01 -0.17 5.59 -27.26 -0.15 -0.33 16 19 C -0.10 -2.12 4.79 -26.41 -0.13 -2.25 16 20 H 0.06 0.75 7.97 -51.93 -0.41 0.34 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.92 6.78 -51.93 -0.35 0.57 16 23 H 0.09 1.04 8.00 -51.92 -0.42 0.62 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.93 7.57 -51.93 -0.39 0.53 16 27 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 29 H 0.04 0.99 5.80 -51.93 -0.30 0.69 16 30 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.27 8.13 6.36 -40.82 -0.26 7.87 16 32 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.03 0.68 5.01 -51.93 -0.26 0.42 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.03 0.61 6.06 -51.93 -0.31 0.29 16 LS Contribution 263.66 15.07 3.97 3.97 Total: -1.00 -29.06 263.66 -8.40 -37.46 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.69 Total: -3.92 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -1.42 Total: -22.00 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.60 Total: -36.27 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.67 Total: 20.75 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.06 -8.40 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.750 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds