Wall clock time and date at job start Mon Mar 30 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 112.79225 * 2 1 4 4 C 1.53516 * 113.47629 * 130.81261 * 2 1 3 5 5 C 1.53505 * 83.57740 * 140.78960 * 4 2 1 6 6 N 1.47479 * 87.93467 * 333.97434 * 5 4 2 7 7 C 1.46898 * 111.00091 * 138.70151 * 6 5 4 8 8 H 1.08997 * 109.35682 * 321.70462 * 7 6 5 9 9 C 1.52961 * 109.41176 * 81.53080 * 7 6 5 10 10 C 1.53223 * 109.40502 * 183.70436 * 9 7 6 11 11 C 1.51267 * 108.53765 * 305.37022 * 10 9 7 12 12 C 1.37876 * 120.85110 * 231.32500 * 11 10 9 13 13 N 1.31513 * 120.00093 * 5.66746 * 12 11 10 14 14 Si 1.86804 * 119.99900 * 185.66883 * 12 11 10 15 15 H 1.48500 * 109.46887 * 269.99980 * 14 12 11 16 16 H 1.48502 * 109.47308 * 29.99825 * 14 12 11 17 17 H 1.48502 * 109.47021 * 149.99892 * 14 12 11 18 18 C 1.51269 * 118.29844 * 51.59878 * 11 10 9 19 19 C 1.52957 * 109.41374 * 201.87891 * 7 6 5 20 20 H 1.08995 * 109.47313 * 190.80589 * 1 2 3 21 21 H 1.09000 * 109.47211 * 310.81448 * 1 2 3 22 22 H 1.09006 * 109.46899 * 70.80756 * 1 2 3 23 23 H 1.09007 * 114.16947 * 27.14004 * 4 2 1 24 24 H 1.09001 * 114.34019 * 254.45370 * 4 2 1 25 25 H 1.09000 * 113.47480 * 219.20801 * 5 4 2 26 26 H 1.08994 * 113.53404 * 88.75101 * 5 4 2 27 27 H 1.09000 * 109.48389 * 63.72392 * 9 7 6 28 28 H 1.09002 * 109.49151 * 303.69065 * 9 7 6 29 29 H 1.08998 * 109.63008 * 185.65728 * 10 9 7 30 30 H 1.08997 * 109.63093 * 65.08633 * 10 9 7 31 31 H 0.96999 * 119.99731 * 354.39673 * 13 12 11 32 32 H 1.09001 * 109.62687 * 68.11707 * 18 11 10 33 33 H 1.09007 * 109.62400 * 188.68749 * 18 11 10 34 34 H 1.08996 * 109.48931 * 296.27995 * 19 7 6 35 35 H 1.09005 * 109.48281 * 56.30655 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0048 0.0000 4 6 2.1415 -0.9203 1.0657 5 6 3.1572 -1.2395 -0.0401 6 7 2.1175 -0.8841 -1.0239 7 6 2.6852 -0.1030 -2.1309 8 1 3.4358 0.5842 -1.7405 9 6 3.3382 -1.0501 -3.1389 10 6 4.0103 -0.2309 -4.2457 11 6 2.9824 0.7037 -4.8440 12 6 2.7838 0.7568 -6.2074 13 7 3.4107 -0.0880 -6.9966 14 14 1.6243 2.0288 -6.9335 15 1 0.2528 1.4641 -7.0060 16 1 1.6163 3.2394 -6.0735 17 1 2.0822 2.3941 -8.2981 18 6 2.1822 1.5830 -3.9087 19 6 1.5724 0.6939 -2.8138 20 1 -0.3634 -1.0094 0.1927 21 1 -0.3634 0.6717 0.7778 22 1 -0.3633 0.3379 -0.9706 23 1 1.5076 -1.7617 1.3459 24 1 2.5647 -0.3962 1.9227 25 1 3.4463 -2.2899 -0.0741 26 1 4.0141 -0.5660 -0.0516 27 1 2.5772 -1.6965 -3.5763 28 1 4.0864 -1.6603 -2.6329 29 1 4.3897 -0.9003 -5.0177 30 1 4.8314 0.3492 -3.8246 31 1 4.0734 -0.6939 -6.6298 32 1 2.8370 2.3281 -3.4569 33 1 1.3865 2.0795 -4.4642 34 1 0.8532 0.0064 -3.2587 35 1 1.0690 1.3200 -2.0771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885364331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:50 Heat of formation + Delta-G solvation = -5.594573 kcal Electronic energy + Delta-G solvation = -14537.046663 eV Core-core repulsion = 12341.228528 eV Total energy + Delta-G solvation = -2195.818135 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40721 -38.03625 -34.38559 -32.05669 -30.85522 -30.29717 -26.95665 -24.41137 -23.71535 -22.76263 -21.04389 -20.51917 -18.49419 -17.41783 -15.94224 -15.81242 -15.63587 -15.56164 -14.66757 -14.52760 -14.01388 -13.88240 -13.47681 -12.97298 -12.77247 -12.71605 -12.58258 -12.47646 -12.03948 -11.93644 -11.89174 -11.62515 -11.32749 -11.17413 -10.88057 -10.52626 -10.25121 -9.75505 -8.60765 -6.17491 1.49107 1.56534 1.73818 2.53988 3.01186 3.19262 3.55485 3.87023 3.96716 4.08333 4.33422 4.40675 4.45254 4.50596 4.60636 4.72587 4.79152 4.86047 4.92538 4.96424 4.97239 5.03262 5.08092 5.15231 5.20674 5.23757 5.26842 5.44477 5.48353 5.62245 5.72029 6.05123 6.22328 6.26356 6.73377 7.52531 8.76708 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047627 B = 0.009488 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.758365 B = 2950.538076 C = 3375.020909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.018 3.982 3 H 0.070 0.930 4 C -0.122 4.122 5 C -0.009 4.009 6 N -0.487 5.487 7 C 0.078 3.922 8 H 0.030 0.970 9 C -0.080 4.080 10 C -0.004 4.004 11 C -0.574 4.574 12 C -0.023 4.023 13 N -0.946 5.946 14 Si 1.100 2.900 15 H -0.273 1.273 16 H -0.259 1.259 17 H -0.292 1.292 18 C -0.012 4.012 19 C -0.091 4.091 20 H 0.060 0.940 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.000 1.000 31 H 0.258 0.742 32 H 0.012 0.988 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 1.328 15.353 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.138 4.138 6 N -0.210 5.210 7 C -0.031 4.031 8 H 0.048 0.952 9 C -0.118 4.118 10 C -0.043 4.043 11 C -0.593 4.593 12 C -0.220 4.220 13 N -0.585 5.585 14 Si 0.923 3.077 15 H -0.199 1.199 16 H -0.184 1.184 17 H -0.218 1.218 18 C -0.050 4.050 19 C -0.129 4.129 20 H 0.079 0.921 21 H 0.096 0.904 22 H 0.063 0.937 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.392 1.311 13.593 14.682 hybrid contribution 1.752 -0.194 1.023 2.038 sum -3.640 1.117 14.616 15.103 Atomic orbital electron populations 1.21671 0.93020 1.02401 1.01717 1.23397 0.97441 0.96123 0.92174 0.91158 1.23176 0.97248 0.99686 0.95813 1.23760 0.94968 1.02118 0.92960 1.69010 1.19214 1.29177 1.03619 1.21827 0.95397 0.93624 0.92229 0.95169 1.21299 0.97790 0.96876 0.95872 1.19467 0.95275 0.95129 0.94387 1.21600 1.21672 1.22666 0.93392 1.27097 1.00840 0.99817 0.94251 1.70899 1.26654 1.21509 1.39402 0.83179 0.74655 0.74821 0.75057 1.19914 1.18364 1.21815 1.19758 0.95573 0.94846 0.94859 1.21582 0.96533 0.97594 0.97170 0.92096 0.90417 0.93679 0.88250 0.88811 0.90056 0.91886 0.94872 0.94126 0.96904 0.98215 0.93058 0.96942 0.94618 0.94118 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.79 71.98 0.70 -2.36 16 2 C 0.02 0.46 2.65 42.19 0.11 0.58 16 3 H 0.07 1.88 7.77 -2.39 -0.02 1.86 16 4 C -0.12 -2.53 8.00 30.94 0.25 -2.28 16 5 C -0.01 -0.25 7.32 83.57 0.61 0.37 16 6 N -0.49 -16.08 5.93 -877.04 -5.20 -21.27 16 7 C 0.08 3.08 1.47 44.89 0.07 3.15 16 8 H 0.03 1.22 7.53 -2.39 -0.02 1.20 16 9 C -0.08 -3.63 5.43 30.66 0.17 -3.47 16 10 C 0.00 -0.23 5.96 30.10 0.18 -0.05 16 11 C -0.57 -31.43 5.50 -16.17 -0.09 -31.52 16 12 C -0.02 -1.30 5.46 84.65 0.46 -0.84 16 13 N -0.95 -58.91 13.66 21.45 0.29 -58.62 16 14 Si 1.10 50.82 27.48 68.60 1.88 52.71 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.26 -10.80 6.71 99.48 0.67 -10.13 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 18 C -0.01 -0.57 5.59 30.25 0.17 -0.40 16 19 C -0.09 -3.75 4.79 30.80 0.15 -3.60 16 20 H 0.06 1.39 7.97 -2.39 -0.02 1.37 16 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.04 1.21 6.78 -2.38 -0.02 1.19 16 23 H 0.10 1.90 8.00 -2.38 -0.02 1.88 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 1.70 7.57 -2.39 -0.02 1.68 16 27 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.68 7.87 -2.39 -0.02 1.66 16 29 H 0.01 0.71 5.80 -2.39 -0.01 0.69 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.26 16.22 6.36 -92.71 -0.59 15.63 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.04 1.60 5.01 -2.38 -0.01 1.59 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 2.12 6.06 -2.38 -0.01 2.11 16 Total: -1.00 -63.09 263.66 0.95 -62.14 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.19 Total: 5.47 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 2.78 Total: -40.43 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -4.90 Total: -79.89 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 1.88 Total: 52.71 kcal Total: -63.09 0.95 -62.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.546 kcal (2) G-P(sol) polarization free energy of solvation -63.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds