Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 112.78705 * 2 1 4 4 C 1.53505 * 113.47439 * 229.18974 * 2 1 3 5 5 C 1.53506 * 83.57695 * 271.25757 * 4 2 1 6 6 N 1.47472 * 113.47464 * 130.81018 * 2 1 3 7 7 C 1.46907 * 111.00233 * 336.06241 * 6 2 1 8 8 H 1.09001 * 109.41101 * 45.08486 * 7 6 2 9 9 C 1.52958 * 109.35591 * 164.90691 * 7 6 2 10 10 C 1.53230 * 109.40421 * 183.66750 * 9 7 6 11 11 C 1.51271 * 108.53730 * 305.37441 * 10 9 7 12 12 C 1.37871 * 120.85196 * 231.34341 * 11 10 9 13 13 N 1.31520 * 119.99613 * 0.02562 * 12 11 10 14 14 Si 1.86802 * 120.00193 * 179.97438 * 12 11 10 15 15 H 1.48503 * 109.46880 * 90.00423 * 14 12 11 16 16 H 1.48498 * 109.47092 * 210.00269 * 14 12 11 17 17 H 1.48495 * 109.47086 * 330.00286 * 14 12 11 18 18 C 1.51301 * 118.30461 * 51.34771 * 11 10 9 19 19 C 1.52956 * 109.41280 * 285.22647 * 7 6 2 20 20 H 1.08999 * 109.47397 * 295.17437 * 1 2 3 21 21 H 1.09003 * 109.47287 * 55.16897 * 1 2 3 22 22 H 1.09000 * 109.47392 * 175.17206 * 1 2 3 23 23 H 1.09001 * 114.17333 * 157.61011 * 4 2 1 24 24 H 1.09003 * 114.34333 * 24.92219 * 4 2 1 25 25 H 1.08994 * 113.48057 * 219.21007 * 5 4 2 26 26 H 1.09002 * 113.47704 * 88.74171 * 5 4 2 27 27 H 1.08999 * 109.48384 * 303.65384 * 9 7 6 28 28 H 1.09007 * 109.48005 * 63.67756 * 9 7 6 29 29 H 1.09002 * 109.62241 * 65.08789 * 10 9 7 30 30 H 1.08996 * 109.62763 * 185.66028 * 10 9 7 31 31 H 0.97001 * 119.99501 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.64370 * 188.94869 * 18 11 10 33 33 H 1.08992 * 109.62643 * 68.36066 * 18 11 10 34 34 H 1.08999 * 109.48122 * 296.34565 * 19 7 6 35 35 H 1.08999 * 109.48499 * 56.37159 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0050 0.0000 4 6 2.1415 -0.9202 -1.0657 5 6 2.0424 -1.9803 0.0401 6 7 2.1175 -0.8840 1.0238 7 6 1.1774 -1.1048 2.1310 8 1 0.1866 -1.3156 1.7284 9 6 1.6500 -2.2950 2.9675 10 6 0.6231 -2.5837 4.0676 11 6 0.3977 -1.3151 4.8600 12 6 0.4899 -1.3149 6.2357 13 7 0.7776 -2.4273 6.8755 14 14 0.2076 0.2656 7.1906 15 1 -1.2319 0.3853 7.5352 16 1 1.0147 0.2418 8.4369 17 1 0.6157 1.4261 6.3587 18 6 0.0683 -0.0462 4.1045 19 6 1.1154 0.1501 3.0032 20 1 -0.3634 0.4371 0.9300 21 1 -0.3634 0.5870 -0.8436 22 1 -0.3634 -1.0240 -0.0865 23 1 3.1626 -0.6617 -1.3459 24 1 1.4944 -1.1073 -1.9227 25 1 2.8987 -2.6537 0.0742 26 1 1.0891 -2.5087 0.0509 27 1 1.7532 -3.1712 2.3274 28 1 2.6131 -2.0608 3.4213 29 1 -0.3157 -2.9055 3.6167 30 1 1.0025 -3.3645 4.7267 31 1 0.8428 -2.4271 7.8433 32 1 0.0914 0.8032 4.7872 33 1 -0.9217 -0.1331 3.6571 34 1 2.0910 0.3265 3.4562 35 1 0.8399 1.0070 2.3883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885364332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 20.996933 kcal Electronic energy + Delta-G solvation = -14642.883674 eV Core-core repulsion = 12448.218633 eV Total energy + Delta-G solvation = -2194.665041 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38300 -36.05934 -32.25401 -30.18037 -29.04682 -28.92452 -25.56027 -23.94618 -21.62667 -21.18728 -19.33217 -18.12536 -16.21306 -15.73357 -15.37391 -14.44740 -14.30059 -13.35725 -12.66138 -12.57533 -12.33454 -12.28832 -12.12673 -11.79570 -11.52280 -11.33428 -10.84477 -10.80641 -10.49339 -10.25567 -10.03891 -9.99652 -9.86164 -9.37377 -8.80164 -8.52495 -8.40749 -8.26370 -6.05098 -3.95263 3.29843 3.38083 3.39075 4.39026 4.42105 4.66509 5.05293 5.21070 5.43182 5.46770 5.51445 5.76752 5.79481 5.88019 5.91533 5.98830 6.10038 6.21245 6.31869 6.46480 6.50665 6.71344 6.82474 6.90354 6.97893 7.04952 7.13615 7.24351 7.49088 7.66985 7.74446 7.81839 7.91245 8.45146 9.02275 9.59579 11.04713 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052226 B = 0.009489 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.003062 B = 2950.104489 C = 3264.018468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.024 3.976 3 H 0.085 0.915 4 C -0.146 4.146 5 C 0.000 4.000 6 N -0.468 5.468 7 C 0.059 3.941 8 H 0.046 0.954 9 C -0.097 4.097 10 C 0.010 3.990 11 C -0.483 4.483 12 C 0.074 3.926 13 N -0.892 5.892 14 Si 0.886 3.114 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.264 1.264 18 C -0.021 4.021 19 C -0.094 4.094 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.054 0.946 29 H 0.000 1.000 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.013 0.987 34 H 0.056 0.944 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 3.428 -12.041 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.086 4.086 3 H 0.103 0.897 4 C -0.183 4.183 5 C -0.129 4.129 6 N -0.190 5.190 7 C -0.049 4.049 8 H 0.064 0.936 9 C -0.136 4.136 10 C -0.027 4.027 11 C -0.502 4.502 12 C -0.128 4.128 13 N -0.530 5.530 14 Si 0.715 3.285 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.189 1.189 18 C -0.059 4.059 19 C -0.132 4.132 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.095 3.508 -11.481 12.055 hybrid contribution -0.919 0.554 0.357 1.131 sum 0.177 4.062 -11.124 11.843 Atomic orbital electron populations 1.22102 0.95376 1.02056 1.02672 1.23109 0.93858 0.98799 0.92803 0.89690 1.23197 1.01403 0.97469 0.96265 1.23617 1.01301 0.95505 0.92483 1.69153 1.41005 1.05660 1.03219 1.22156 0.93444 0.97894 0.91372 0.93610 1.21622 1.01055 0.93808 0.97086 1.19376 0.92808 0.97428 0.93126 1.20047 1.46424 0.93161 0.90586 1.24855 0.94691 0.96191 0.97099 1.69844 1.48352 1.26493 1.08337 0.86685 0.78301 0.84480 0.79040 1.20517 1.21656 1.18947 1.19832 0.94129 0.97122 0.94801 1.21531 1.00946 0.93984 0.96722 0.90886 0.92371 0.92459 0.89496 0.91335 0.90470 0.91779 0.95544 0.92710 0.98189 0.92449 0.92686 0.94740 0.96855 0.92568 0.95159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 7.98 37.16 0.30 -1.96 16 2 C 0.02 0.35 4.16 -71.45 -0.30 0.05 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.15 -1.81 8.06 -26.21 -0.21 -2.02 16 5 C 0.00 0.00 6.36 -7.56 -0.05 -0.05 16 6 N -0.47 -8.23 6.12 -228.60 -1.40 -9.63 16 7 C 0.06 1.19 1.06 -67.75 -0.07 1.12 16 8 H 0.05 0.92 5.42 -51.93 -0.28 0.64 16 9 C -0.10 -2.19 5.30 -26.63 -0.14 -2.33 16 10 C 0.01 0.27 5.97 -27.48 -0.16 0.11 16 11 C -0.48 -13.05 5.51 -98.91 -0.55 -13.60 16 12 C 0.07 2.06 5.46 -17.82 -0.10 1.97 16 13 N -0.89 -26.24 12.73 55.43 0.71 -25.54 16 14 Si 0.89 21.50 27.53 -169.99 -4.68 16.82 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.26 -6.21 6.10 56.52 0.35 -5.86 16 18 C -0.02 -0.50 5.59 -27.47 -0.15 -0.65 16 19 C -0.09 -2.00 4.97 -26.64 -0.13 -2.14 16 20 H 0.07 1.12 5.88 -51.93 -0.31 0.82 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.80 6.37 -51.93 -0.33 0.47 16 23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.96 6.95 -51.93 -0.36 0.60 16 27 H 0.03 0.54 7.37 -51.93 -0.38 0.16 16 28 H 0.05 1.32 8.14 -51.92 -0.42 0.89 16 29 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.82 4.60 -51.93 -0.24 0.58 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.58 6.48 -51.93 -0.34 0.24 16 LS Contribution 258.82 15.07 3.90 3.90 Total: -1.00 -28.51 258.82 -8.64 -37.15 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.60 Total: -3.20 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -1.57 Total: -19.50 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.69 Total: -35.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.68 Total: 16.82 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.51 -8.64 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.145 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds