Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 112.78705 * 2 1 4 4 C 1.53505 * 113.47439 * 229.18974 * 2 1 3 5 5 C 1.53506 * 83.57695 * 271.25757 * 4 2 1 6 6 N 1.47472 * 113.47464 * 130.81018 * 2 1 3 7 7 C 1.46907 * 111.00233 * 336.06241 * 6 2 1 8 8 H 1.09001 * 109.41101 * 45.08486 * 7 6 2 9 9 C 1.52958 * 109.35591 * 164.90691 * 7 6 2 10 10 C 1.53230 * 109.40421 * 183.66750 * 9 7 6 11 11 C 1.51271 * 108.53730 * 305.37441 * 10 9 7 12 12 C 1.37871 * 120.85196 * 231.34341 * 11 10 9 13 13 N 1.31520 * 119.99613 * 0.02562 * 12 11 10 14 14 Si 1.86802 * 120.00193 * 179.97438 * 12 11 10 15 15 H 1.48503 * 109.46880 * 90.00423 * 14 12 11 16 16 H 1.48498 * 109.47092 * 210.00269 * 14 12 11 17 17 H 1.48495 * 109.47086 * 330.00286 * 14 12 11 18 18 C 1.51301 * 118.30461 * 51.34771 * 11 10 9 19 19 C 1.52956 * 109.41280 * 285.22647 * 7 6 2 20 20 H 1.08999 * 109.47397 * 295.17437 * 1 2 3 21 21 H 1.09003 * 109.47287 * 55.16897 * 1 2 3 22 22 H 1.09000 * 109.47392 * 175.17206 * 1 2 3 23 23 H 1.09001 * 114.17333 * 157.61011 * 4 2 1 24 24 H 1.09003 * 114.34333 * 24.92219 * 4 2 1 25 25 H 1.08994 * 113.48057 * 219.21007 * 5 4 2 26 26 H 1.09002 * 113.47704 * 88.74171 * 5 4 2 27 27 H 1.08999 * 109.48384 * 303.65384 * 9 7 6 28 28 H 1.09007 * 109.48005 * 63.67756 * 9 7 6 29 29 H 1.09002 * 109.62241 * 65.08789 * 10 9 7 30 30 H 1.08996 * 109.62763 * 185.66028 * 10 9 7 31 31 H 0.97001 * 119.99501 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.64370 * 188.94869 * 18 11 10 33 33 H 1.08992 * 109.62643 * 68.36066 * 18 11 10 34 34 H 1.08999 * 109.48122 * 296.34565 * 19 7 6 35 35 H 1.08999 * 109.48499 * 56.37159 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0050 0.0000 4 6 2.1415 -0.9202 -1.0657 5 6 2.0424 -1.9803 0.0401 6 7 2.1175 -0.8840 1.0238 7 6 1.1774 -1.1048 2.1310 8 1 0.1866 -1.3156 1.7284 9 6 1.6500 -2.2950 2.9675 10 6 0.6231 -2.5837 4.0676 11 6 0.3977 -1.3151 4.8600 12 6 0.4899 -1.3149 6.2357 13 7 0.7776 -2.4273 6.8755 14 14 0.2076 0.2656 7.1906 15 1 -1.2319 0.3853 7.5352 16 1 1.0147 0.2418 8.4369 17 1 0.6157 1.4261 6.3587 18 6 0.0683 -0.0462 4.1045 19 6 1.1154 0.1501 3.0032 20 1 -0.3634 0.4371 0.9300 21 1 -0.3634 0.5870 -0.8436 22 1 -0.3634 -1.0240 -0.0865 23 1 3.1626 -0.6617 -1.3459 24 1 1.4944 -1.1073 -1.9227 25 1 2.8987 -2.6537 0.0742 26 1 1.0891 -2.5087 0.0509 27 1 1.7532 -3.1712 2.3274 28 1 2.6131 -2.0608 3.4213 29 1 -0.3157 -2.9055 3.6167 30 1 1.0025 -3.3645 4.7267 31 1 0.8428 -2.4271 7.8433 32 1 0.0914 0.8032 4.7872 33 1 -0.9217 -0.1331 3.6571 34 1 2.0910 0.3265 3.4562 35 1 0.8399 1.0070 2.3883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885364332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 2.315916 kcal Electronic energy + Delta-G solvation = -14643.693743 eV Core-core repulsion = 12448.218633 eV Total energy + Delta-G solvation = -2195.475110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.66108 -37.85158 -34.22392 -31.83099 -30.74047 -30.28473 -27.16009 -25.14723 -23.43955 -23.02664 -21.02507 -19.36975 -18.11156 -17.02480 -16.64193 -16.41970 -15.74382 -15.13893 -14.45846 -14.36065 -13.94646 -13.70656 -13.47345 -13.26902 -12.98103 -12.71283 -12.67905 -12.37957 -12.15543 -11.92713 -11.75358 -11.53243 -11.29453 -11.20118 -10.71586 -10.53396 -10.39920 -9.59006 -8.17396 -6.11505 1.37240 1.39552 1.48307 2.39988 3.03649 3.22406 3.58114 3.93536 4.08863 4.18385 4.33148 4.37712 4.49983 4.56850 4.71588 4.76353 4.81746 4.93011 4.99411 5.02043 5.05730 5.11555 5.16075 5.16383 5.26213 5.36444 5.43293 5.58402 5.61455 5.66169 5.78080 5.88250 6.32045 6.36182 6.94557 7.45934 8.93934 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052226 B = 0.009489 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.003062 B = 2950.104489 C = 3264.018468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.019 3.981 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.007 4.007 6 N -0.490 5.490 7 C 0.071 3.929 8 H 0.049 0.951 9 C -0.087 4.087 10 C 0.008 3.992 11 C -0.497 4.497 12 C 0.016 3.984 13 N -0.935 5.935 14 Si 0.942 3.058 15 H -0.272 1.272 16 H -0.293 1.293 17 H -0.249 1.249 18 C -0.022 4.022 19 C -0.087 4.087 20 H 0.054 0.946 21 H 0.085 0.915 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.031 0.969 29 H -0.002 1.002 30 H 0.023 0.977 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.022 0.978 34 H 0.036 0.964 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 5.055 -14.254 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.090 4.090 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.136 4.136 6 N -0.213 5.213 7 C -0.037 4.037 8 H 0.067 0.933 9 C -0.126 4.126 10 C -0.030 4.030 11 C -0.516 4.516 12 C -0.182 4.182 13 N -0.575 5.575 14 Si 0.769 3.231 15 H -0.198 1.198 16 H -0.219 1.219 17 H -0.174 1.174 18 C -0.060 4.060 19 C -0.126 4.126 20 H 0.073 0.927 21 H 0.104 0.896 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.825 5.149 -13.719 14.677 hybrid contribution -0.834 -0.018 0.977 1.285 sum -0.008 5.132 -12.742 13.737 Atomic orbital electron populations 1.22064 0.94673 1.02196 1.02925 1.23266 0.94479 0.98949 0.92323 0.89210 1.23129 1.02372 0.94692 0.95870 1.23728 1.01384 0.95677 0.92840 1.69115 1.40627 1.07888 1.03655 1.21883 0.94130 0.95782 0.91892 0.93333 1.21423 0.98647 0.95948 0.96545 1.19333 0.93500 0.96477 0.93696 1.20679 1.45037 0.94724 0.91142 1.25686 0.95045 0.99082 0.98354 1.69992 1.50487 1.28629 1.08437 0.85775 0.78383 0.81316 0.77665 1.19770 1.21915 1.17368 1.19845 0.95287 0.95471 0.95385 1.21410 0.98962 0.95761 0.96418 0.92682 0.89625 0.92813 0.88453 0.88809 0.90405 0.91797 0.94000 0.95011 0.98347 0.95866 0.92886 0.94608 0.96005 0.94464 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 7.98 71.98 0.57 -3.29 16 2 C 0.02 0.49 4.16 42.18 0.18 0.66 16 3 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 4 C -0.12 -2.56 8.06 30.93 0.25 -2.31 16 5 C -0.01 -0.20 6.36 83.57 0.53 0.33 16 6 N -0.49 -16.16 6.12 -877.17 -5.37 -21.53 16 7 C 0.07 2.78 1.06 44.89 0.05 2.82 16 8 H 0.05 1.87 5.42 -2.39 -0.01 1.86 16 9 C -0.09 -3.94 5.30 30.66 0.16 -3.78 16 10 C 0.01 0.42 5.97 30.11 0.18 0.60 16 11 C -0.50 -27.09 5.51 -16.16 -0.09 -27.18 16 12 C 0.02 0.90 5.46 84.65 0.46 1.36 16 13 N -0.94 -56.81 12.73 21.45 0.27 -56.54 16 14 Si 0.94 44.28 27.53 68.60 1.89 46.17 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.25 -10.99 6.10 99.48 0.61 -10.38 16 18 C -0.02 -1.02 5.59 30.12 0.17 -0.85 16 19 C -0.09 -3.61 4.97 30.66 0.15 -3.46 16 20 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 21 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.33 6.37 -2.39 -0.02 1.31 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 1.75 6.95 -2.39 -0.02 1.73 16 27 H 0.04 1.72 7.37 -2.39 -0.02 1.70 16 28 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.02 1.35 7.07 -2.39 -0.02 1.33 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.04 1.64 4.60 -2.39 -0.01 1.62 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.03 6.48 -2.39 -0.02 2.01 16 Total: -1.00 -61.84 258.82 0.36 -61.48 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.96 Total: 5.52 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 2.61 Total: -35.09 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -5.10 Total: -78.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.89 Total: 46.17 kcal Total: -61.84 0.36 -61.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.791 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds