Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.50705 * 109.46885 * 119.99398 * 2 1 3 5 5 H 1.08002 * 119.99353 * 114.68701 * 4 2 1 6 6 C 1.37871 * 120.00239 * 294.68811 * 4 2 1 7 7 N 1.31516 * 120.00341 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00018 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47103 * 89.99878 * 8 6 4 10 10 H 1.48500 * 109.46993 * 209.99952 * 8 6 4 11 11 H 1.48499 * 109.46972 * 329.99780 * 8 6 4 12 12 N 1.46894 * 109.47210 * 239.99622 * 2 1 3 13 13 C 1.47476 * 111.00186 * 72.24491 * 12 2 1 14 14 C 1.53507 * 87.93582 * 138.70366 * 13 12 2 15 15 C 1.47482 * 111.00220 * 168.21730 * 12 2 1 16 16 H 1.08995 * 113.47269 * 336.06548 * 15 12 2 17 17 C 1.53001 * 113.47392 * 106.46705 * 15 12 2 18 18 C 1.53781 * 113.61562 * 272.08056 * 17 15 12 19 19 C 1.53783 * 87.07783 * 220.02334 * 18 17 15 20 20 C 1.53770 * 87.08472 * 25.43548 * 19 18 17 21 21 H 1.09006 * 109.46973 * 294.41062 * 1 2 3 22 22 H 1.08999 * 109.47059 * 54.40961 * 1 2 3 23 23 H 1.09002 * 109.47362 * 174.41401 * 1 2 3 24 24 H 0.96991 * 120.00518 * 180.02562 * 7 6 4 25 25 H 1.09004 * 113.47591 * 253.47383 * 13 12 2 26 26 H 1.09001 * 113.47390 * 23.93756 * 13 12 2 27 27 H 1.08998 * 114.17421 * 220.33154 * 14 13 12 28 28 H 1.09002 * 114.17358 * 87.62036 * 14 13 12 29 29 H 1.09000 * 112.84938 * 43.38954 * 17 15 12 30 30 H 1.08996 * 113.61143 * 334.56900 * 18 17 15 31 31 H 1.08999 * 113.61444 * 105.47579 * 18 17 15 32 32 H 1.09004 * 113.61422 * 270.87877 * 19 18 17 33 33 H 1.09003 * 113.61355 * 139.98806 * 19 18 17 34 34 H 1.09010 * 113.61230 * 220.02229 * 20 19 18 35 35 H 1.08999 * 113.69661 * 89.12941 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5806 -1.6358 1.1338 6 6 1.7919 -0.1788 2.4798 7 7 2.2306 -0.7984 3.5537 8 14 0.8429 1.4215 2.6471 9 1 -0.6076 1.1267 2.7665 10 1 1.3025 2.1450 3.8598 11 1 1.0795 2.2650 1.4480 12 7 2.0197 -0.6925 -1.1993 13 6 1.8000 0.1238 -2.4078 14 6 3.1947 -0.3057 -2.8839 15 6 3.4666 -0.4736 -1.3824 16 1 3.8323 0.4344 -0.9031 17 6 4.3158 -1.7018 -1.0489 18 6 4.7187 -1.7883 0.4327 19 6 6.0964 -2.2705 -0.0514 20 6 5.8103 -1.5211 -1.3633 21 1 -0.3633 0.4247 0.9359 22 1 -0.3633 0.5981 -0.8357 23 1 -0.3634 -1.0228 -0.1000 24 1 2.0612 -0.4247 4.4325 25 1 0.9925 -0.2452 -3.0402 26 1 1.7210 1.1913 -2.2021 27 1 3.7704 0.4908 -3.3553 28 1 3.2065 -1.2392 -3.4466 29 1 3.8954 -2.6269 -1.4432 30 1 4.7462 -0.8213 0.9348 31 1 4.1644 -2.5416 0.9926 32 1 6.1631 -3.3518 -0.1717 33 1 6.9288 -1.8547 0.5164 34 1 6.1373 -2.0588 -2.2535 35 1 6.1360 -0.4810 -1.3537 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885364405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = 55.663081 kcal Electronic energy + Delta-G solvation = -14676.612803 eV Core-core repulsion = 12483.450999 eV Total energy + Delta-G solvation = -2193.161804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84382 -37.17002 -33.56114 -31.10301 -27.13152 -26.58697 -25.07388 -24.52021 -22.42166 -20.29354 -19.02496 -18.69214 -16.69853 -15.50888 -15.14719 -14.48993 -14.21757 -13.37408 -13.04087 -12.79519 -12.28339 -12.11196 -11.73759 -11.60916 -11.29151 -11.18605 -11.14124 -10.88068 -10.43247 -10.14485 -10.12637 -9.81456 -9.47111 -9.35679 -9.08782 -8.85165 -8.51217 -7.84979 -6.01502 -3.98689 3.27479 3.37768 3.38228 4.43343 4.73404 5.02664 5.24504 5.29812 5.30513 5.48024 5.57208 5.81909 5.91768 6.04901 6.09262 6.14200 6.17923 6.25512 6.33709 6.36911 6.41381 6.52013 6.52440 6.62230 6.73429 6.81684 6.89800 7.08073 7.17808 7.30675 7.45663 7.84494 8.05443 8.68982 9.11591 9.61406 11.10465 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.013685 C = 0.010039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.732853 B = 2045.576136 C = 2788.586810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.145 3.855 3 H 0.003 0.997 4 C -0.502 4.502 5 H 0.098 0.902 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.873 3.127 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.451 5.451 13 C -0.010 4.010 14 C -0.148 4.148 15 C 0.058 3.942 16 H 0.070 0.930 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.134 4.134 21 H 0.043 0.957 22 H 0.022 0.978 23 H 0.057 0.943 24 H 0.262 0.738 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 1.183 -9.919 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.037 3.963 3 H 0.020 0.980 4 C -0.541 4.541 5 H 0.116 0.884 6 C -0.130 4.130 7 N -0.538 5.538 8 Si 0.704 3.296 9 H -0.206 1.206 10 H -0.223 1.223 11 H -0.195 1.195 12 N -0.173 5.173 13 C -0.139 4.139 14 C -0.185 4.185 15 C -0.051 4.051 16 H 0.088 0.912 17 C -0.101 4.101 18 C -0.146 4.146 19 C -0.190 4.190 20 C -0.172 4.172 21 H 0.062 0.938 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.493 0.523 -9.617 10.245 hybrid contribution -0.466 1.853 0.398 1.952 sum 3.027 2.376 -9.219 9.990 Atomic orbital electron populations 1.22044 0.98544 1.00858 0.98378 1.20288 0.91995 0.93013 0.90992 0.97956 1.21199 1.34977 1.10213 0.87664 0.88426 1.24895 0.95585 0.96577 0.95979 1.69869 1.46756 1.39299 0.97860 0.87040 0.80433 0.85042 0.77128 1.20562 1.22324 1.19481 1.68852 1.05456 1.41323 1.01694 1.23647 0.97401 0.97009 0.95845 1.23218 0.96958 1.01175 0.97185 1.23058 0.91489 0.97337 0.93258 0.91241 1.22279 0.92586 0.97620 0.97617 1.22850 0.93497 1.02598 0.95687 1.22927 0.99158 0.99418 0.97491 1.22867 0.97116 1.00113 0.97121 0.93830 0.95898 0.92373 0.92825 0.91016 0.92669 0.91988 0.89686 0.89712 0.89514 0.91095 0.91136 0.92404 0.92564 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.77 37.16 0.33 -2.84 16 2 C 0.15 3.47 1.23 -68.87 -0.08 3.38 16 3 H 0.00 0.07 6.25 -51.93 -0.32 -0.25 16 4 C -0.50 -13.68 7.83 -34.44 -0.27 -13.95 16 5 H 0.10 2.81 4.93 -52.49 -0.26 2.55 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.87 21.86 24.68 -169.99 -4.19 17.66 16 9 H -0.28 -6.88 6.85 56.52 0.39 -6.49 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.27 -6.55 6.39 56.52 0.36 -6.19 16 12 N -0.45 -9.45 5.91 -229.91 -1.36 -10.81 16 13 C -0.01 -0.17 7.00 -7.55 -0.05 -0.22 16 14 C -0.15 -2.27 8.00 -26.20 -0.21 -2.48 16 15 C 0.06 1.09 2.32 -71.44 -0.17 0.92 16 16 H 0.07 1.40 7.74 -51.93 -0.40 0.99 16 17 C -0.08 -1.46 3.61 -89.80 -0.32 -1.79 16 18 C -0.11 -2.16 5.35 -25.92 -0.14 -2.29 16 19 C -0.15 -2.41 8.08 -25.92 -0.21 -2.62 16 20 C -0.13 -2.00 7.63 -25.92 -0.20 -2.19 16 21 H 0.04 1.02 3.98 -51.93 -0.21 0.81 16 22 H 0.02 0.45 7.76 -51.93 -0.40 0.04 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.09 1.92 7.77 -51.93 -0.40 1.52 16 31 H 0.07 1.58 7.01 -51.93 -0.36 1.22 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 264.86 15.07 3.99 3.99 Total: -1.00 -28.69 264.86 -7.97 -36.65 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.75 Total: 0.81 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.42 Total: -22.17 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.58 Total: -36.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.19 Total: 17.66 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.69 -7.97 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.317 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds