Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.50705 * 109.46885 * 119.99398 * 2 1 3 5 5 H 1.08002 * 119.99353 * 114.68701 * 4 2 1 6 6 C 1.37871 * 120.00239 * 294.68811 * 4 2 1 7 7 N 1.31516 * 120.00341 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00018 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47103 * 89.99878 * 8 6 4 10 10 H 1.48500 * 109.46993 * 209.99952 * 8 6 4 11 11 H 1.48499 * 109.46972 * 329.99780 * 8 6 4 12 12 N 1.46894 * 109.47210 * 239.99622 * 2 1 3 13 13 C 1.47476 * 111.00186 * 72.24491 * 12 2 1 14 14 C 1.53507 * 87.93582 * 138.70366 * 13 12 2 15 15 C 1.47482 * 111.00220 * 168.21730 * 12 2 1 16 16 H 1.08995 * 113.47269 * 336.06548 * 15 12 2 17 17 C 1.53001 * 113.47392 * 106.46705 * 15 12 2 18 18 C 1.53781 * 113.61562 * 272.08056 * 17 15 12 19 19 C 1.53783 * 87.07783 * 220.02334 * 18 17 15 20 20 C 1.53770 * 87.08472 * 25.43548 * 19 18 17 21 21 H 1.09006 * 109.46973 * 294.41062 * 1 2 3 22 22 H 1.08999 * 109.47059 * 54.40961 * 1 2 3 23 23 H 1.09002 * 109.47362 * 174.41401 * 1 2 3 24 24 H 0.96991 * 120.00518 * 180.02562 * 7 6 4 25 25 H 1.09004 * 113.47591 * 253.47383 * 13 12 2 26 26 H 1.09001 * 113.47390 * 23.93756 * 13 12 2 27 27 H 1.08998 * 114.17421 * 220.33154 * 14 13 12 28 28 H 1.09002 * 114.17358 * 87.62036 * 14 13 12 29 29 H 1.09000 * 112.84938 * 43.38954 * 17 15 12 30 30 H 1.08996 * 113.61143 * 334.56900 * 18 17 15 31 31 H 1.08999 * 113.61444 * 105.47579 * 18 17 15 32 32 H 1.09004 * 113.61422 * 270.87877 * 19 18 17 33 33 H 1.09003 * 113.61355 * 139.98806 * 19 18 17 34 34 H 1.09010 * 113.61230 * 220.02229 * 20 19 18 35 35 H 1.08999 * 113.69661 * 89.12941 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5806 -1.6358 1.1338 6 6 1.7919 -0.1788 2.4798 7 7 2.2306 -0.7984 3.5537 8 14 0.8429 1.4215 2.6471 9 1 -0.6076 1.1267 2.7665 10 1 1.3025 2.1450 3.8598 11 1 1.0795 2.2650 1.4480 12 7 2.0197 -0.6925 -1.1993 13 6 1.8000 0.1238 -2.4078 14 6 3.1947 -0.3057 -2.8839 15 6 3.4666 -0.4736 -1.3824 16 1 3.8323 0.4344 -0.9031 17 6 4.3158 -1.7018 -1.0489 18 6 4.7187 -1.7883 0.4327 19 6 6.0964 -2.2705 -0.0514 20 6 5.8103 -1.5211 -1.3633 21 1 -0.3633 0.4247 0.9359 22 1 -0.3633 0.5981 -0.8357 23 1 -0.3634 -1.0228 -0.1000 24 1 2.0612 -0.4247 4.4325 25 1 0.9925 -0.2452 -3.0402 26 1 1.7210 1.1913 -2.2021 27 1 3.7704 0.4908 -3.3553 28 1 3.2065 -1.2392 -3.4466 29 1 3.8954 -2.6269 -1.4432 30 1 4.7462 -0.8213 0.9348 31 1 4.1644 -2.5416 0.9926 32 1 6.1631 -3.3518 -0.1717 33 1 6.9288 -1.8547 0.5164 34 1 6.1373 -2.0588 -2.2535 35 1 6.1360 -0.4810 -1.3537 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885364405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 36.052688 kcal Electronic energy + Delta-G solvation = -14677.463174 eV Core-core repulsion = 12483.450999 eV Total energy + Delta-G solvation = -2194.012174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.33071 -38.60428 -35.51657 -33.09659 -28.59838 -28.15201 -26.90462 -26.10601 -23.79986 -22.09075 -20.49089 -20.12941 -18.74876 -17.25405 -16.62476 -16.01986 -15.95298 -15.00997 -14.74623 -14.36548 -14.21222 -13.92314 -13.17492 -13.02725 -12.87541 -12.76683 -12.58888 -12.52778 -12.23859 -11.90614 -11.82036 -11.26525 -11.22554 -10.99790 -10.71507 -10.67011 -10.47572 -9.47702 -8.20838 -6.20944 1.27072 1.31060 1.39416 2.33611 3.11594 3.27493 3.67417 3.89648 3.98438 4.06968 4.21877 4.35416 4.49307 4.53871 4.61488 4.67350 4.70790 4.86849 4.89315 4.96123 5.02204 5.03546 5.05488 5.09747 5.16324 5.31045 5.38680 5.43006 5.58802 5.67230 5.78167 5.89296 6.27272 6.69925 6.91242 7.42385 8.94145 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.013685 C = 0.010039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.732853 B = 2045.576136 C = 2788.586810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H -0.007 1.007 4 C -0.496 4.496 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.929 3.071 9 H -0.270 1.270 10 H -0.299 1.299 11 H -0.255 1.255 12 N -0.475 5.475 13 C -0.011 4.011 14 C -0.120 4.120 15 C 0.047 3.953 16 H 0.050 0.950 17 C -0.082 4.082 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.113 4.113 21 H 0.032 0.968 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.261 0.739 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 2.051 -12.756 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.039 3.961 3 H 0.010 0.990 4 C -0.534 4.534 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.757 3.243 9 H -0.196 1.196 10 H -0.226 1.226 11 H -0.180 1.180 12 N -0.197 5.197 13 C -0.140 4.140 14 C -0.158 4.158 15 C -0.063 4.063 16 H 0.068 0.932 17 C -0.100 4.100 18 C -0.158 4.158 19 C -0.178 4.178 20 C -0.150 4.150 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.698 1.395 -12.485 13.095 hybrid contribution -0.502 1.503 1.269 2.030 sum 3.196 2.898 -11.215 12.017 Atomic orbital electron populations 1.21948 0.97302 1.01091 0.99085 1.20132 0.92898 0.92019 0.91005 0.98989 1.21472 1.33436 1.09209 0.89322 0.91238 1.25619 0.96912 0.99845 0.95788 1.70019 1.49020 1.41312 0.98359 0.86119 0.79430 0.81440 0.77311 1.19614 1.22628 1.17964 1.68835 1.07088 1.42060 1.01721 1.23751 0.99427 0.96711 0.94124 1.23135 0.95370 1.02721 0.94556 1.23147 0.90293 0.96722 0.96100 0.93210 1.22295 0.94841 0.97357 0.95553 1.22702 0.96733 0.99673 0.96718 1.22902 0.96495 1.00547 0.97883 1.22757 0.93984 1.00766 0.97531 0.94916 0.92777 0.92902 0.93013 0.89327 0.92486 0.89137 0.88153 0.89963 0.93055 0.95293 0.89667 0.91531 0.89423 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.77 71.98 0.63 -5.33 16 2 C 0.15 7.03 1.23 44.17 0.05 7.08 16 3 H -0.01 -0.36 6.25 -2.38 -0.01 -0.38 16 4 C -0.50 -27.92 7.83 25.60 0.20 -27.72 16 5 H 0.07 4.25 4.93 -2.91 -0.01 4.24 16 6 C 0.01 0.87 5.45 84.65 0.46 1.34 16 7 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 8 Si 0.93 45.58 24.68 68.60 1.69 47.27 16 9 H -0.27 -12.77 6.85 99.48 0.68 -12.09 16 10 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 11 H -0.26 -11.81 6.39 99.48 0.64 -11.18 16 12 N -0.47 -19.36 5.91 -881.31 -5.20 -24.56 16 13 C -0.01 -0.35 7.00 83.57 0.59 0.24 16 14 C -0.12 -3.23 8.00 30.94 0.25 -2.98 16 15 C 0.05 1.69 2.32 42.18 0.10 1.79 16 16 H 0.05 1.99 7.74 -2.39 -0.02 1.97 16 17 C -0.08 -2.84 3.61 -10.27 -0.04 -2.88 16 18 C -0.12 -4.99 5.35 31.12 0.17 -4.82 16 19 C -0.14 -4.31 8.08 31.12 0.25 -4.06 16 20 C -0.11 -3.04 7.63 31.12 0.24 -2.80 16 21 H 0.03 1.47 3.98 -2.38 -0.01 1.46 16 22 H 0.05 1.99 7.76 -2.39 -0.02 1.97 16 23 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.06 1.79 7.73 -2.39 -0.02 1.77 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.10 2.44 8.12 -2.39 -0.02 2.42 16 29 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.05 2.44 7.77 -2.39 -0.02 2.42 16 31 H 0.03 1.39 7.01 -2.39 -0.02 1.37 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -64.43 264.86 0.63 -63.79 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.95 Total: 12.53 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 2.90 Total: -40.14 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -4.91 Total: -83.46 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.69 Total: 47.27 kcal Total: -64.43 0.63 -63.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.843 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds