Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 C 1.50701 * 109.46993 * 240.00274 * 2 1 3 5 5 H 1.08005 * 119.99580 * 245.20897 * 4 2 1 6 6 C 1.37876 * 120.00443 * 65.21006 * 4 2 1 7 7 N 1.31521 * 119.99612 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00153 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46860 * 90.00125 * 8 6 4 10 10 H 1.48504 * 109.47357 * 209.99979 * 8 6 4 11 11 H 1.48500 * 109.47571 * 330.00478 * 8 6 4 12 12 N 1.46903 * 109.47019 * 120.00337 * 2 1 3 13 13 C 1.47479 * 110.99953 * 62.80707 * 12 2 1 14 14 C 1.53512 * 87.93086 * 221.29604 * 13 12 2 15 15 C 1.47476 * 110.99841 * 326.83304 * 12 2 1 16 16 H 1.08998 * 113.47667 * 23.94377 * 15 12 2 17 17 C 1.52998 * 113.47929 * 253.47053 * 15 12 2 18 18 C 1.53782 * 113.61726 * 153.55067 * 17 15 12 19 19 C 1.53773 * 87.08414 * 220.02307 * 18 17 15 20 20 C 1.53783 * 113.61127 * 56.05543 * 17 15 12 21 21 H 1.09000 * 109.47197 * 310.33434 * 1 2 3 22 22 H 1.09001 * 109.47044 * 70.33624 * 1 2 3 23 23 H 1.08997 * 109.47267 * 190.33281 * 1 2 3 24 24 H 0.96991 * 119.99677 * 179.97438 * 7 6 4 25 25 H 1.09005 * 113.47820 * 336.06352 * 13 12 2 26 26 H 1.09001 * 113.47667 * 106.47074 * 13 12 2 27 27 H 1.09002 * 114.17356 * 139.67100 * 14 13 12 28 28 H 1.08998 * 114.17449 * 272.19180 * 14 13 12 29 29 H 1.09002 * 112.84929 * 284.86535 * 17 15 12 30 30 H 1.09000 * 113.61470 * 334.57760 * 18 17 15 31 31 H 1.08998 * 113.61106 * 105.47067 * 18 17 15 32 32 H 1.09003 * 113.61520 * 270.88591 * 19 18 17 33 33 H 1.08998 * 113.61908 * 139.98362 * 19 18 17 34 34 H 1.08998 * 113.61589 * 254.52692 * 20 17 15 35 35 H 1.08999 * 113.61721 * 25.35022 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5821 -1.6350 -1.1336 6 6 1.7901 -0.1800 -2.4799 7 7 1.1211 0.9462 -2.5978 8 14 2.4134 -1.0602 -4.0051 9 1 1.3804 -2.0141 -4.4829 10 1 2.6981 -0.0647 -5.0696 11 1 3.6571 -1.8017 -3.6753 12 7 2.0197 -0.6926 1.1994 13 6 1.6026 -2.1072 1.2002 14 6 1.3059 -1.9611 2.6992 15 6 1.1092 -0.4815 2.3402 16 1 0.0891 -0.2389 2.0426 17 6 1.6639 0.4801 3.3931 18 6 0.5742 1.2023 4.2029 19 6 1.4510 2.4622 4.1106 20 6 2.0467 1.8581 2.8279 21 1 -0.3633 0.6651 0.7834 22 1 -0.3633 0.3458 -0.9677 23 1 -0.3633 -1.0110 0.1843 24 1 0.9510 1.3194 -3.4767 25 1 0.7142 -2.2983 0.5982 26 1 2.4158 -2.7998 0.9830 27 1 0.3965 -2.4659 3.0255 28 1 2.1620 -2.1568 3.3449 29 1 2.4418 0.0297 4.0096 30 1 -0.3752 1.2914 3.6750 31 1 0.4610 0.8225 5.2183 32 1 2.1701 2.5543 4.9245 33 1 0.8840 3.3773 3.9398 34 1 3.1222 2.0079 2.7333 35 1 1.5009 2.1260 1.9232 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885364406.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = 56.332926 kcal Electronic energy + Delta-G solvation = -14543.754666 eV Core-core repulsion = 12350.621908 eV Total energy + Delta-G solvation = -2193.132757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02815 -37.34682 -33.39964 -30.42546 -27.25993 -26.09641 -25.21117 -24.97196 -22.41351 -20.82509 -18.99257 -18.19928 -16.12984 -15.60179 -15.22936 -14.77077 -14.06620 -13.62599 -13.18838 -12.43663 -12.19072 -12.00729 -11.64378 -11.41075 -11.30997 -11.13041 -10.79675 -10.76350 -10.50786 -10.29945 -10.12986 -9.91300 -9.82544 -9.42122 -9.24670 -8.68450 -8.42599 -7.53842 -6.01479 -4.05167 3.30406 3.37162 3.41528 4.42339 4.81081 5.00976 5.12814 5.19216 5.31063 5.31950 5.58850 5.68301 5.89157 6.01630 6.10384 6.14327 6.20511 6.24403 6.37086 6.40055 6.48152 6.55235 6.66153 6.72365 6.79842 6.83554 6.95762 7.00573 7.20451 7.67261 7.79451 8.00301 8.39852 8.52433 9.01356 9.59738 11.06569 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043458 B = 0.009280 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.145538 B = 3016.678245 C = 3354.871549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.047 0.953 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.461 5.461 13 C 0.012 3.988 14 C -0.152 4.152 15 C 0.019 3.981 16 H 0.088 0.912 17 C -0.085 4.085 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.124 4.124 21 H 0.017 0.983 22 H 0.080 0.920 23 H 0.029 0.971 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -1.020 10.557 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.070 3.930 3 H 0.064 0.936 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.183 5.183 13 C -0.117 4.117 14 C -0.190 4.190 15 C -0.090 4.090 16 H 0.105 0.895 17 C -0.104 4.104 18 C -0.175 4.175 19 C -0.184 4.184 20 C -0.162 4.162 21 H 0.036 0.964 22 H 0.099 0.901 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.816 -0.681 10.407 10.461 hybrid contribution -0.597 -0.528 -1.185 1.427 sum -1.413 -1.209 9.222 9.408 Atomic orbital electron populations 1.22405 1.00984 0.97683 1.01507 1.19675 0.89775 0.95993 0.87536 0.93555 1.21126 1.34622 1.08422 0.90119 0.92243 1.24933 0.95275 0.94993 0.98997 1.69927 1.40539 1.19116 1.23567 0.86561 0.79230 0.79318 0.82691 1.20818 1.21256 1.19891 1.69069 1.41683 1.02874 1.04631 1.23429 1.00032 0.94324 0.93887 1.23288 1.00698 0.97122 0.97857 1.23622 0.97909 0.93641 0.93855 0.89463 1.22353 0.97238 0.94646 0.96147 1.22954 0.97915 0.96870 0.99736 1.22858 0.99350 0.97308 0.98892 1.22768 1.00869 0.95602 0.96914 0.96392 0.90125 0.95235 0.93023 0.91232 0.91548 0.92349 0.90227 0.89844 0.90486 0.92246 0.90864 0.92098 0.91905 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 7.61 37.16 0.28 -3.69 16 2 C 0.18 4.49 2.66 -68.86 -0.18 4.31 16 3 H 0.05 1.31 7.59 -51.93 -0.39 0.92 16 4 C -0.50 -13.96 8.01 -34.44 -0.28 -14.24 16 5 H 0.06 1.66 7.19 -52.48 -0.38 1.28 16 6 C 0.06 1.65 5.26 -17.82 -0.09 1.56 16 7 N -0.89 -25.66 11.72 55.43 0.65 -25.01 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.46 -10.09 6.13 -229.89 -1.41 -11.50 16 13 C 0.01 0.25 6.23 -7.54 -0.05 0.20 16 14 C -0.15 -2.50 8.00 -26.20 -0.21 -2.71 16 15 C 0.02 0.35 2.57 -71.43 -0.18 0.17 16 16 H 0.09 1.67 4.57 -51.93 -0.24 1.43 16 17 C -0.08 -1.37 3.77 -89.81 -0.34 -1.70 16 18 C -0.14 -1.88 7.64 -25.92 -0.20 -2.08 16 19 C -0.15 -1.98 8.08 -25.92 -0.21 -2.19 16 20 C -0.12 -2.07 7.46 -25.92 -0.19 -2.26 16 21 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 22 H 0.08 2.14 6.33 -51.93 -0.33 1.81 16 23 H 0.03 0.66 5.82 -51.93 -0.30 0.36 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.07 1.45 5.91 -51.93 -0.31 1.15 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.23 7.96 -51.93 -0.41 0.82 16 29 H 0.08 1.30 7.92 -51.93 -0.41 0.88 16 30 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.59 7.45 -51.93 -0.39 1.20 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -28.14 268.40 -8.97 -37.11 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.58 Total: 1.45 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -1.65 Total: -22.64 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.76 Total: -36.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.14 -8.97 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364406.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.445 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds